Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1906 ATGGCGGTTGAAACCCAACAGGGAAAGGACTTCATTTTCAGGTCCAAGCTTCCGGATATATACATCCCCAAACACCTTCCCCTCCACGCTTACTGCTTCCAAAATCTCCCTGACCACGCCTCACGCCCCTGCTTGATCAATGCCCCCACCGGAGAAGTCTACACCTACTCCGACGTCGACGCCACCGCCCGCAAAGTGGCGGCCGGCCTCCACAAATTGGGCGTGCGACAGGGCGAGGTCATCATGATCCTTCTCCCCAATTGCCCCGAATTCGTGTTCGCTTTTCTCGGGGCGTCTCATCGCGGCGCCATGGCCACTGCGGCCAACCCCTTCTTCACTGCGGCGGAGATTGCGAAGCAGGCCAAGGCGTCCAACGCCAAGGTGCTCATCACGCAGGCCTCTTACTACGAAAAGGTGAAGGAGCTGGAGGAGGTGAAGCTGGTGTTCGTGGACTCGTGTCCGGCGGCGGAGGCAGATGGCGGTGGTCACATCCATTTCTCGGAGCTGTGTGAGGGAGGCGGCGAGATGGATGAGGTGGATATAAGAGCGGATGACGTGGTGGCGTTGCCGTATTCGTCGGGGACAACGGGGCTTCCGAAGGGTGTGATGCTGACGCACAAAGGGCTGGTGACGAGCATTGCTCAGCAGGTCGACGGCGAGAATCCGAACCTCTACTACCACTCCGACGACACCATCCTCTGCGTGCTTCCCCTGTTCCACATATACTCCCTCAACTCTGTTCTGCTCTGTGGCTTGCGTTCCAAGGCTGCGATTCTCCTCATGCCCAAGTTCGAAATCAAAGCCCTCCTCGCCCTCATTCACAAACACAGAGTCACCGTTGCAGCCGTCGTTCCCCCCATCGTTCTCGCCATTGCCAGATCACCCGATCTCGCCAGCTACGACCTCTCTTCCATCAGGCTCTTCAAGTCCGGTGGAGCTCCTCTCGGCAAAGACCTCGAAGACAGTGTGAGGTCCAAATTCCCCACCGCCAGACTCGGCCAGGGTTACGGCATGACGGAGGCGGGCCCCGTGCTCACAATGTCCTTAGCTTTTGCCAAAGAAGCCATGCACGTGAAAGCAGGGGCTTGTGGAACCGTTGTGAGAAACGCGGAGATGAAGATTGTGGATCCCGAAACCGCCCAATCCCTACCTCGAAACCACTCCGGTGAAATCTGCATAAGAGGCGACCAGATCATGAAAGGTTATCTGAACGACAAAGAGGCAACAGAGAGGACGATAGACAAAGAGGGTTGGTTGCACACAGGTGACATCGGTTACATCGACGAAGACGATGAGTTATTCATAGTTGATCGGTTAAAGGAACTGATCAAGTACAAAGGCTTTCAGGTGGCTCCGGCTGAACTTGAAGCCCTTCTTCTCACTCATCCCAACATCTCTGACGCCGCCGTCGTTCCAATGAAGGATGAAGCCGCGGGAGAAGTACCTGTTGCATTTGTGGTGAGATCAAATGCTTGCATCGACACAACCCAGGATGAAATCAAACACTTTATCTCCAAACAAGTGGTGTTTTACAAAAGAATAAGCACAGTGTTCTTCGTTGATGCAATTCCCAAGTCACCATCAGGCAAAATCTTGCGTAAGGATCTACGAGCAAAGCTAGCAGCACCTGCAGCTGTATCAAAATGA 1647 0.5458 MAVETQQGKDFIFRSKLPDIYIPKHLPLHAYCFQNLPDHASRPCLINAPTGEVYTYSDVDATARKVAAGLHKLGVRQGEVIMILLPNCPEFVFAFLGASHRGAMATAANPFFTAAEIAKQAKASNAKVLITQASYYEKVKELEEVKLVFVDSCPAAEADGGGHIHFSELCEGGGEMDEVDIRADDVVALPYSSGTTGLPKGVMLTHKGLVTSIAQQVDGENPNLYYHSDDTILCVLPLFHIYSLNSVLLCGLRSKAAILLMPKFEIKALLALIHKHRVTVAAVVPPIVLAIARSPDLASYDLSSIRLFKSGGAPLGKDLEDSVRSKFPTARLGQGYGMTEAGPVLTMSLAFAKEAMHVKAGACGTVVRNAEMKIVDPETAQSLPRNHSGEICIRGDQIMKGYLNDKEATERTIDKEGWLHTGDIGYIDEDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPNISDAAVVPMKDEAAGEVPVAFVVRSNACIDTTQDEIKHFISKQVVFYKRISTVFFVDAIPKSPSGKILRKDLRAKLAAPAAVSK* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1906 548 Gene3D - 440 543 IPR045851 -
Pvu5g1906 548 Gene3D - 6 439 IPR042099 -
Pvu5g1906 548 Pfam AMP-binding enzyme C-terminal domain 454 530 IPR025110 -
Pvu5g1906 548 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 7 542 - -
Pvu5g1906 548 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 542 - -
Pvu5g1906 548 SUPERFAMILY Acetyl-CoA synthetase-like 12 542 - -
Pvu5g1906 548 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
Pvu5g1906 548 CDD 4CL 22 536 - -
Pvu5g1906 548 Pfam AMP-binding enzyme 39 445 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1906 Pvu-Chr5 40478925 40481188 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1906 5 508 Monolignol Biosynthesis Gene Families AT1G51680 69.261 0.0 703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1906 K01904 - gmx:100819192 875.544