Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1900 ATGGATATAGTTTGTCTGAACAGTGAGGGTGTAGGAGATGAAGAAGGCGATGCCCCTGTTGCTCCTGTGGTTGGGATGGAATTTGAGAGTTACGAGGATGTCTATTACTTCTATAATTGGTATGCCAAGGAACAGGGATTTGGGGTTAGGGTCACAAATACCTGGTACCGCAAGACTAAGGAACGTTACAGAGCAAAACTTAGCTGCAGCAGCGCAGGCTTCAAGAAAAGAACCGAAGCTAATCGCCCCAGACCCGAAACCAGAACTGGTTGTCCTGCTATGATCAAGTTCAGGTTGATGGATTCCACAAGATGGAGAATTATTGAAGTTGAGCTTGACCACAACCACTTGATCAACCCCACCAGTGCCAAGTTTTACAAGTCCCATAAGCAAGTTGCTCTTGGCACCAAAAGAACCTTCCACTTAGATGCTGCTGCTGCTACTCAACAGGTTCACAAAATTAGGATGTTTCGAACTGTCATAGTCGATGCTGAGGATGATTCTAGTGTGCATCCTGATGAAGGGGAATCCCCAAAAGGGCTCTACTCCAACACTCAGTTGAAGCTGAAGAAAGGTGATGCTGAAGCAATTTTGAACTTTTTCAGTCACCAGCAACTGGCAGATCCAGATTTCTTCTATGTGGTCGATGTGAATGAGAGGGGATGTTTCAGGAATTTGTTCTGGGCTGATGCAAAGTCCAGGGTGGCATACAGTTATTTTAGTGATGTTGTAGCCATTGACACAGCATGTTTGAACGGTGCATATCAAGTTCCCCTGGTTATGTTCCTTGGGATAAACCACCATAAACAATCTATCTTGTTTGGGTGTGGACTCCTTGCTAGTGATACGGTTGAATCATACACTTGGCTGTTCAGAGCGTGGCTTACATGTATCTTGGGACGCCCTCCACAAGTTATCATTACCCACCAATGTGGAATCTTGCAAACTGTGGTTGCTGATGTCTTTCCAAGATCTACACACTGCCTTTGTTTGTTTAATATCATGCAAAAAGTTCCAGAAAAGCTGGGAGCCTGCGTACAGTATGAAGCAATCAGTGCAGTTTTGAGCAGAGCAGTGTATTCCTCTCTAAGGGCTGAGGAATTTGAAGCAACTTGGGAGGACATGATGAAAAGCAACGAAATTAGAGGCAATAAATGGCTCCAATCTTTATACGAGGAACGTAAACGGTGGGCTCCAGTTTATCTGAAGGAAATCTTCTTGGCAGGAATATTTTCAATTCCACAAAGTGATGTTGTATCATTTTTCTTTGAGGGGTGCCTCGATGAACAGACTTCTCTGAAAGAATTTTTAGAAAAATATGATCAGACTTTACAGACAAAGCGACAACTTGAAGCTTTGGCAGATTTGGATTCAAAATCTTGCAGCTTTGTTCCAAAATCGAGGTCTTACTTTGAGTTGCAGGTTTCAAAGTTATATACCAATGAAATATTAAGAATGTTTGAAAGGGAAGTGGAAGGGATGTTTTCTTGCTTTAACTCCAGACAGATAAATGTTGATGGAGCGGTCATCACCTACATTGTGGAAGAACAAGTTGAAGTTGAGGGAAATCAGAGAGGTGCAAGAGATTATGAGGTGTGTTATAATGAACCTGAAATGGAGGTGTTTTGCATCTGTGGTCTGTTCAATTTCAGAGGTTGGTTGTGCAGGCATGCTTTATTTATTTTGAGCCAAAATGGGATAAAAGAGATCCCAGCTCAGTACATTGTTTCGCGGTGGAGAAAAGATATGAAGCGTGGCAGCGTTTATGATCACAACTGCAGTGGCATTGATATCAGTAATCCAGTTCATAGGTATGATCATTTGTACAAACAGATTGTAAAGGTTGTAGAGGAAGGTAAGAAATCTGATGATCATTACAGGACTGCACTACAAGCAATGGAGAATATATTGAGGAAGCTTCATATTCTAAACGTTGAGGATCCTCACAAACTAATGTACAAGAATTCATGTCCGAATAACTAG 1983 0.4201 MDIVCLNSEGVGDEEGDAPVAPVVGMEFESYEDVYYFYNWYAKEQGFGVRVTNTWYRKTKERYRAKLSCSSAGFKKRTEANRPRPETRTGCPAMIKFRLMDSTRWRIIEVELDHNHLINPTSAKFYKSHKQVALGTKRTFHLDAAAATQQVHKIRMFRTVIVDAEDDSSVHPDEGESPKGLYSNTQLKLKKGDAEAILNFFSHQQLADPDFFYVVDVNERGCFRNLFWADAKSRVAYSYFSDVVAIDTACLNGAYQVPLVMFLGINHHKQSILFGCGLLASDTVESYTWLFRAWLTCILGRPPQVIITHQCGILQTVVADVFPRSTHCLCLFNIMQKVPEKLGACVQYEAISAVLSRAVYSSLRAEEFEATWEDMMKSNEIRGNKWLQSLYEERKRWAPVYLKEIFLAGIFSIPQSDVVSFFFEGCLDEQTSLKEFLEKYDQTLQTKRQLEALADLDSKSCSFVPKSRSYFELQVSKLYTNEILRMFEREVEGMFSCFNSRQINVDGAVITYIVEEQVEVEGNQRGARDYEVCYNEPEMEVFCICGLFNFRGWLCRHALFILSQNGIKEIPAQYIVSRWRKDMKRGSVYDHNCSGIDISNPVHRYDHLYKQIVKVVEEGKKSDDHYRTALQAMENILRKLHILNVEDPHKLMYKNSCPNN* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1900 660 Coils Coil 433 453 - -
Pvu5g1900 660 SMART 26again6 541 568 IPR006564 GO:0008270
Pvu5g1900 660 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 11 643 IPR031052 GO:0006355
Pvu5g1900 660 ProSiteProfiles Zinc finger SWIM-type profile. 530 566 IPR007527 GO:0008270
Pvu5g1900 660 Pfam MULE transposase domain 243 337 IPR018289 -
Pvu5g1900 660 Pfam FAR1 DNA-binding domain 37 119 IPR004330 -
Pvu5g1900 660 PANTHER PROTEIN FAR1-RELATED SEQUENCE 8 11 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1900 Pvu-Chr5 40451841 40454303 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Pvu5g1900 MULE 2.8e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1900 - K17604 pvu:PHAVU_005G183900g 1357.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1900 5 40451841 40454303 Pvu5g1900 5 40451841 40454303 ECH