Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1899 ATGAAGAAGACGAATGAGTTTTCAGTCTCAACCACACGCACTTACAGTTCTCTCTATTTGAATCCTCTGAACCACCCCAGCCACTGCCGGAGCTACAGCTCCGACTATGTCCCCAAACCTCACTTTGAATTTCAGGATCACCACCCCGACAAGGAAAACCAAGATGCCAATGCCACCATGCCCAAGCCCTTCAGGTCTCTCTCCACTCACAGGGTCTTCAAGCCCTCTTCCCTTCAATTCTGCATGCAAATGAACAACCTTCAAACTTCCCTCAACATTTGGGACTACTCTGATTCCGAGTCAGCTCCTGCTTCCTCTTGGTCTACACTGCCCAACAAGTACTTGATCTGTAGACCCTTGCCATTAGATGTTGGAAGGTGCACTTGCTTTATTCTCAAGGAGCCAACGCCCCATGGAATTTCAGGGGGCAATTTCTTCTCTCTTTATACCAATGAAGGCCAGGGACGGCAGAATAGGAAACTTGCTGTTGCCCTCCACAAACGGCGGAATGGGAGGTCTTACTTCACCATTGCTCAGAAAGTAAAAGGACTACTCTCCCATTCTGATGATACTTTTCTTGGCACTGTAACAGCTAACCTCATCGGCTCAAAATACTACATTTGGGATCAGGCGTATCGTCATAATTCCCGTGCTGAACAACCAAAGCCACCTCTTGCTGTTGTGAGCTACATACCTACCATAACAACATGTACAGGAAGTCACAGAAGCATGAGGGCATATGTACCCAAACATCAATATATGCCACTCAAGAACACAACCCAGGTACAACATGTAAAAGGATTGCCAATGAAGTGGGAGGGAAAGCTGGACAAAGTCCATCAACTGTTCTCAAAGGCTCCACTTTACAACAAGATTTCAAAGCAATATGAGCTTGACTTTAGAGATAAAGGAAAGACGGGCCTCAAAATCCAAAGATCGGTTAAAAATTTTCAGCTAACTTTAGAGGAGAATGGGAGTCAGACGATACTGCAGCTAGGGAGGGCAGGAAAATCAAAATTCGTTATGGACTACAGGTACCCTTTGACAGGTTACCAGGCGTTTTGCATGTGCTTGGCTTCCATGGATGCAAAGCTTTGTTGCACAGTATAA 1110 0.4577 MKKTNEFSVSTTRTYSSLYLNPLNHPSHCRSYSSDYVPKPHFEFQDHHPDKENQDANATMPKPFRSLSTHRVFKPSSLQFCMQMNNLQTSLNIWDYSDSESAPASSWSTLPNKYLICRPLPLDVGRCTCFILKEPTPHGISGGNFFSLYTNEGQGRQNRKLAVALHKRRNGRSYFTIAQKVKGLLSHSDDTFLGTVTANLIGSKYYIWDQAYRHNSRAEQPKPPLAVVSYIPTITTCTGSHRSMRAYVPKHQYMPLKNTTQVQHVKGLPMKWEGKLDKVHQLFSKAPLYNKISKQYELDFRDKGKTGLKIQRSVKNFQLTLEENGSQTILQLGRAGKSKFVMDYRYPLTGYQAFCMCLASMDAKLCCTV* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1899 369 SUPERFAMILY Tubby C-terminal domain-like 104 368 IPR025659 -
Pvu5g1899 369 Gene3D Tubby Protein; Chain A 109 368 IPR025659 -
Pvu5g1899 369 PRINTS Tubby superfamily signature 192 216 IPR000007 -
Pvu5g1899 369 PRINTS Tubby superfamily signature 305 321 IPR000007 -
Pvu5g1899 369 PRINTS Tubby superfamily signature 325 344 IPR000007 -
Pvu5g1899 369 PRINTS Tubby superfamily signature 346 368 IPR000007 -
Pvu5g1899 369 PANTHER TUBBY-RELATED 1 367 - -
Pvu5g1899 369 PANTHER TUBBY-LIKE PROTEIN 8 1 367 - -
Pvu5g1899 369 Pfam Tub family 118 362 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1899 Pvu-Chr5 40446964 40449466 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1899 64 262 TUB Transcription Factor Family AT1G16070 53.881 1.25e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pvu5g1899 Tub 2.6e-40 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1899 K19600 - gmx:100803500 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1899 5 40446964 40449466 Pvu5g1899 5 40446964 40449466 ECH