Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1898 ATGAGAAACAAACACTTCACTCACTCACTCAGAAGCTCCTCAACTTCCAACCGTTTTCTCCTTATGAGCTCCAATGGCCTGAACGTGGAGAGTGGCATCGTGAAGAAGATGAAGATGAAGAAGAAGAAGAAGCTTCCAAGAGACACCCCCTTGCCACGCACCTCACCCTACAGGGGTGTTACCAGGCATCGATGGACAGGTCGATACGAGGCTCATCTCTGGGACAAGACTTCCTGGAATCAATCGCAGAACAAGAAAGGAAGACAAGTATATCTCGGGGCATACGACGATGAAGATGCTGCAGCACGTGCGTATGATTTGGCAGCATTGAAGTATTGGGGTTCGGAAACCCTCCTCAATTTCCCCGTATCGAATTATGAAGAGCAGCTTAAGGAGATGGAGGATCAATCGAAGGAAGAGTATATCGGATCGTTAAGAAGAAAAAGTAGCGGCTTCTCCCGTGGAGTCTCCAAATTCAGAGGCGTAGCAAGACACCATCAGAATGGAAGATGGGAAGCACGAATTGGCAGAGTGTTGGGCAATAAATATCTATATCTTGGAACTTACGGTACAGAAGAAGAAGCAGCGATGGCGTACGATTTGGCGGCCATAGAGTACCGTGGACTTAATGCTGTTACCAACTTTCACCTCAGTCGTTATATGAAAGGGCTACGTCCCAAAGACCAACCTCAAGCCCACCATGCCAGCCCAAGCCCAAGCCCAAGCCCAACCACACCTTCTGGGTCTGAATCTTGCAATGCCACCGTAACATTGGGCCCTCCACAGCCACCGCCTCCACCTACCTCAAATCCTCCTCCTCCTCCTCCTCGCACATTCCCTGAAGATATTCAAACCTTTTTCGAAACTCAAGATTCAGCTGGAATCTACACAGACACTGATGACATTATATTTGGCGACTTGACCTCCATTGCTTCACCAATTTTTCATTGTGACCTTAATGCTTAA 966 0.4803 MRNKHFTHSLRSSSTSNRFLLMSSNGLNVESGIVKKMKMKKKKKLPRDTPLPRTSPYRGVTRHRWTGRYEAHLWDKTSWNQSQNKKGRQVYLGAYDDEDAAARAYDLAALKYWGSETLLNFPVSNYEEQLKEMEDQSKEEYIGSLRRKSSGFSRGVSKFRGVARHHQNGRWEARIGRVLGNKYLYLGTYGTEEEAAMAYDLAAIEYRGLNAVTNFHLSRYMKGLRPKDQPQAHHASPSPSPSPTTPSGSESCNATVTLGPPQPPPPPTSNPPPPPPRTFPEDIQTFFETQDSAGIYTDTDDIIFGDLTSIASPIFHCDLNA* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1898 321 MobiDBLite consensus disorder prediction 226 282 - -
Pvu5g1898 321 ProSiteProfiles AP2/ERF domain profile. 158 216 IPR001471 GO:0003700|GO:0006355
Pvu5g1898 321 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Pvu5g1898 321 PRINTS Ethylene responsive element binding protein signature 104 124 IPR001471 GO:0003700|GO:0006355
Pvu5g1898 321 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 25 235 - -
Pvu5g1898 321 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 25 235 - -
Pvu5g1898 321 SMART rav1_2 158 222 IPR001471 GO:0003700|GO:0006355
Pvu5g1898 321 SMART rav1_2 56 128 IPR001471 GO:0003700|GO:0006355
Pvu5g1898 321 CDD AP2 157 215 IPR001471 GO:0003700|GO:0006355
Pvu5g1898 321 MobiDBLite consensus disorder prediction 40 59 - -
Pvu5g1898 321 Gene3D AP2/ERF domain 56 124 IPR036955 GO:0003700|GO:0006355
Pvu5g1898 321 Gene3D AP2/ERF domain 157 217 IPR036955 GO:0003700|GO:0006355
Pvu5g1898 321 ProSiteProfiles AP2/ERF domain profile. 56 122 IPR001471 GO:0003700|GO:0006355
Pvu5g1898 321 SUPERFAMILY DNA-binding domain 55 124 IPR016177 GO:0003677
Pvu5g1898 321 Pfam AP2 domain 57 114 IPR001471 GO:0003700|GO:0006355
Pvu5g1898 321 Pfam AP2 domain 157 208 IPR001471 GO:0003700|GO:0006355
Pvu5g1898 321 SUPERFAMILY DNA-binding domain 157 218 IPR016177 GO:0003677
Pvu5g1898 321 MobiDBLite consensus disorder prediction 258 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1898 Pvu-Chr5 40443575 40446525 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1898 53 247 AP2-EREBP Transcription Factor Family AT5G57390 64.623 3.17e-91 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Pvu5g1898 AP2 2.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1898 K09285 - gmx:100807781 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1898 5 40443575 40446525 Pvu5g1898 5 40443575 40446525 ECH