Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1894 ATGGTTTTCTCAGAAACCTTGTTCTTCCTTTTACTTGTAACATTTGGTCACTCCTTTCCAAGCCGCCACCACCCTTCTCATTCTTTACTCACCGATAGAGCTGCGCTTCTGGAATTCAGGAAAACAATCGTATCAGACCCTCTTTCCTCACTTGCAAACTGGGATGAAGCCGTTCCTGTATGCAACTTCACGGGTGTTCAATGTGACACGTCCCATAACCGTGTTACACGACTCATCCTATATGATAAACCTCTTCTGGGGCCTCTTTCACCTGTTCTTTCCAATCTCACTGGACTGCACAACCTTGAGATTGTTCGCACTCAATTATTTGGCACTATTTCTCCTGAATTTTCCAACCTCAGACGCATTCACTGCATCATTCTTGAGGGCAATAATTTGCATGGCTCAATACCACACTCCTTTTCCATGCTTTCCAAGCTCAACATTCTAGTGATCAAGGAAAATAACATATCAGGTTCGCTTCCTCCATCTCTCTTTTCTAACTGCACTCTGCTAAATGTTGTGGACTTCTCCAGCAACACATTAAGTGGTAAAATCCCTGAAGAGATTGGAAACTGCAAAATCCTGTGGAGTATCAGTTTATACAACAATCAATTTACTGGGCAGCTTCCTCTCTCGCTCACCAATCTATCGCTTCAACATTTAGATGTGGAGAACAATTATCTATCTGGCGAATTGCCTGCTAAGTTTGTAAGCAGTTGGCCATATCTTCTTTACCTTCATTTGTCATACAACAACATGGTAAGCCATGATAGCAACACCAATCTCGATCCATTTTTCACTGCTCTCAGAAACAACAGTAATCTAGAGGAGCTTGAATTGGCAGGAATGGACCTTGGGGGAAGGTTCACAGATACCTTCCCCAGCCAACTCACCAACCTAAGAACCCTGCTACTGCAGGAAAACCAAATTTTTGGATCAATTCCTTGCAGCTTAGCAAACCTTTCTAGTCTTTTCATTCTGAATTTAACATCCAATCTTCTAAATGGAACTATATCCTCAGATATATTCAGATTGCCAAGGTTGGAACAACTTTTCTTATCAGACAACCATTTCAAAATTCCAATTCCAGAAGCAATAGGCAAGTGTCTCAATCTGGGTCTATTGGATCTGTCACACAACCAATTCTCAGGTAGGATTCCAGACAGTTTGGGAAATTTGGTGAGACTAAATTCTTTGTTTCTCAACAATAACCTTCTCTCAGGAACAATACCCCCCACATTGGGACGGTGCACTAATCTATACAGGCTTGACTTGTCCCACAACAGATTAACAGGAAGCATCCCACTGAAATTGGCAGGCTTGCATGAGATCAGAATTTTCATAAATGTCTCCCATAACCACCTTGAAGGTGACCTGCCAATTGAGCTCAGCAAATTAGAGAAGGTTCAGGAGATAGATCTTTCCTCCAACTACCTCACTGGAAGCATCTTCCCTCAGATATCAGGATGCATTGCTGTTTCAATGATTAACTTTTCGAACAACTTTCTTCAAGGAGAGCTCCCTCAGTCCCTGGGCGATCTGAAGAACCTTGAATCTTTTGATGTTTCACGAAATCAGTTATCTGGATTGATACCAGCAAAAATTGGGAATCCAAAACTTTGTGGGACAATTGCAGGCATATCCTTGTGCTATCAAAGGAGAAGATGGATTCATGCTCGTTTGTTATTGATTTTATTGATTTTGGTGATCTTCGTATCGACCTTGTTGTCAGTAATTTGCTGTGTAATTGGATGCAAGCGTCTTAAAGTAATCATCATCTCTCAGAGGACAGAGGCAAGCAAAAATTCAGCTAGAACAGATTTGATCAGTAACTTCCCAAGAATCTCGTATAAGGAACTGTCAGATGCCACTGGAGGATTTGACAATGAGAGACTTGTTGGATCAGGTAGTTATGGACATGTCTATAGAGGTGTTCTCTTGGAGGGGACACCAATAGCAGTGAAGGTGCTGCATTTGCAATCTGGAAATTCTACCAAGAGCTTCAACAGAGAATGCCAAGTTTTGAAGAGAATTAGACACAGAAATCTTATGAGGATTATTACAGCATGTAGCCTACCCGATTTCAAGGCTCTTGTTCTACCTTATATGGCCAATGGCAGCTTGGAGAGCATCCTCTATCCTTCTTCTGGATCATCACACTTGAGTATTGTCCAGCGGGTCAATATTTGCAGTGATATAGCTGAAGGGATGGCCTATTTGCATCATCATTCTCCTGTCAGAGTCATACACTGTGATCTAAAACCAAGCAATTGTCTTCTCAATGATGACATGACAGCTCTCGTCTCTGATTTTGGTGTTGCAAGGCTAATCATGAGTGCTGGAGGTGGGGCTATTGATAATATGGCCAACTCTAGTGCAAATTTGTTCTTTGGATCTATTGGATACATTGCACCAGAATATGGATTTGGATCCAGTTCATCTATCAAAGGAGATGTCTATAGCTTTGGCATTCTAGTTCTTGAGATGGTGACTAGAAGAAGACCAATAGATGACATGTTTGTTGGAGGGTTAAGTCTGCAGAAATGGGTAAAGATTCATTTTCACGGAAGGGTAGAAAAAGTGGTAGATCCTGCTTTGGTGACAGCTTCAAGAGATGAATCCCAAGAGGTTAGAAAGACGTGGGAGGTTGCTATTTCAGAGTTAATCGAGTTGGGACTTCTCTGCACACAGGAGTCACCTTCGACAAGACCAACCATGCTTGATGCAGCAGATGACTTAGATCGTCTCAAGAGATACCTTAATGGGGACACTGCAGGAACTTTTGCCTCGTCTCTAGGAATTTCATCTTCCACTATAGCTGGTGGTGACTGGTGA 2838 0.4204 MVFSETLFFLLLVTFGHSFPSRHHPSHSLLTDRAALLEFRKTIVSDPLSSLANWDEAVPVCNFTGVQCDTSHNRVTRLILYDKPLLGPLSPVLSNLTGLHNLEIVRTQLFGTISPEFSNLRRIHCIILEGNNLHGSIPHSFSMLSKLNILVIKENNISGSLPPSLFSNCTLLNVVDFSSNTLSGKIPEEIGNCKILWSISLYNNQFTGQLPLSLTNLSLQHLDVENNYLSGELPAKFVSSWPYLLYLHLSYNNMVSHDSNTNLDPFFTALRNNSNLEELELAGMDLGGRFTDTFPSQLTNLRTLLLQENQIFGSIPCSLANLSSLFILNLTSNLLNGTISSDIFRLPRLEQLFLSDNHFKIPIPEAIGKCLNLGLLDLSHNQFSGRIPDSLGNLVRLNSLFLNNNLLSGTIPPTLGRCTNLYRLDLSHNRLTGSIPLKLAGLHEIRIFINVSHNHLEGDLPIELSKLEKVQEIDLSSNYLTGSIFPQISGCIAVSMINFSNNFLQGELPQSLGDLKNLESFDVSRNQLSGLIPAKIGNPKLCGTIAGISLCYQRRRWIHARLLLILLILVIFVSTLLSVICCVIGCKRLKVIIISQRTEASKNSARTDLISNFPRISYKELSDATGGFDNERLVGSGSYGHVYRGVLLEGTPIAVKVLHLQSGNSTKSFNRECQVLKRIRHRNLMRIITACSLPDFKALVLPYMANGSLESILYPSSGSSHLSIVQRVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNCLLNDDMTALVSDFGVARLIMSAGGGAIDNMANSSANLFFGSIGYIAPEYGFGSSSSIKGDVYSFGILVLEMVTRRRPIDDMFVGGLSLQKWVKIHFHGRVEKVVDPALVTASRDESQEVRKTWEVAISELIELGLLCTQESPSTRPTMLDAADDLDRLKRYLNGDTAGTFASSLGISSSTIAGGDW* 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1894 945 SMART LRR_typ_2 394 418 IPR003591 -
Pvu5g1894 945 SMART LRR_typ_2 144 168 IPR003591 -
Pvu5g1894 945 SMART LRR_typ_2 346 370 IPR003591 -
Pvu5g1894 945 SMART LRR_typ_2 298 321 IPR003591 -
Pvu5g1894 945 SMART LRR_typ_2 515 539 IPR003591 -
Pvu5g1894 945 PANTHER OS06G0186100 PROTEIN 536 923 - -
Pvu5g1894 945 PANTHER OS06G0186100 PROTEIN 22 536 - -
Pvu5g1894 945 SUPERFAMILY Protein kinase-like (PK-like) 606 914 IPR011009 -
Pvu5g1894 945 SMART serkin_6 628 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1894 945 CDD STKc_IRAK 634 917 - -
Pvu5g1894 945 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Pvu5g1894 945 PANTHER OS04G0122200 PROTEIN 536 923 - -
Pvu5g1894 945 PANTHER OS04G0122200 PROTEIN 22 536 - -
Pvu5g1894 945 ProSitePatterns Serine/Threonine protein kinases active-site signature. 749 761 IPR008271 GO:0004672|GO:0006468
Pvu5g1894 945 ProSiteProfiles Protein kinase domain profile. 628 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1894 945 SUPERFAMILY L domain-like 289 538 - -
Pvu5g1894 945 Gene3D Ribonuclease Inhibitor 31 145 IPR032675 -
Pvu5g1894 945 Gene3D Ribonuclease Inhibitor 146 218 IPR032675 -
Pvu5g1894 945 ProSitePatterns Protein kinases ATP-binding region signature. 634 656 IPR017441 GO:0005524
Pvu5g1894 945 Pfam Protein kinase domain 629 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1894 945 Gene3D Phosphorylase Kinase; domain 1 609 703 - -
Pvu5g1894 945 Gene3D Transferase(Phosphotransferase) domain 1 704 927 - -
Pvu5g1894 945 Gene3D Ribonuclease Inhibitor 219 549 IPR032675 -
Pvu5g1894 945 SUPERFAMILY L domain-like 58 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1894 Pvu-Chr5 40424702 40428374 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1894 31 904 Receptor kinase-like Gene Family AT3G47570 34.259 2.58e-150 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pvu5g1894 Pkinase 1.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1894 - - vra:106761694 1632.08