Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1885 ATGGACAACAATGAGGAAATCCCCTCAACACCTGCAACACCAAGCACTCCTGGTGCACCTCTTTTTGGTGGTTTCAACAATGGCAGAAATAGGACTAATAACACTAACAAAAACTCCCTTCTCAAGAGTTGTAGGTGCTTCAGTGTGGAGGATTGGAGCATAGAAGATGGAGCCTTACCTGCTGTCTCCTGCTCATTGCCACCCCCTCCTCCTGTCCCTCTTGCAAGAAAGGTTGGTGCCGAGTTCATAGGGACCTTCATTCTCATGTTCGCCGCCACTGCCGCCGCCATTGTCAACCAAAAGACAAACGGCTCTGAGACCCTCATAGGGTGCGCTGCCACCACTGGCCTCGCCGTTATGATCGTCATCCTCGCCACCGGCCACATCTCCGGTGCTCATCTCAACCCTGCTGTCACTCTTTCCTTTGCTGCATTGAAGCACTTCCCCTGGAAGCACGTGCCTATGTATATTGGTGCACAAGTTTTGGCATCTATTTGTGCCGCATTTGCTCTGAAAGGGGTTTATCACCCTTTCATGAGTGGTGGAGTCACTGTTCCTTCAGGAGGATATGCCCAGGCTTTTGCTTTGGAGTTCATCATTGCCTTCAATCTCATGTTCGTTGTCACTGCAGTCGCCACCGACACCAGAGCTGTGGGAGAACTCGCGGGAATCGCGGTGGGTGCCACCGTCATGCTCAATATACTCATAGCAGGGCCAGTATCAGGGGGCTCAATGAACCCAGTAAGAACACTGGGTCCTGCCATCGCCGCAAACAACTACAAAGCCATATGGGTTTATTTGGTAGCTCCCGTTCTTGGAGCTTTAGCCGGGGCAGGTACCTACACTGCAGTGAAGCTGCCCGAAGAAGACGATGACGCCAAAGCAAAGGCTTCAATCAGCTTCAGAAGGTGA 912 0.5186 MDNNEEIPSTPATPSTPGAPLFGGFNNGRNRTNNTNKNSLLKSCRCFSVEDWSIEDGALPAVSCSLPPPPPVPLARKVGAEFIGTFILMFAATAAAIVNQKTNGSETLIGCAATTGLAVMIVILATGHISGAHLNPAVTLSFAALKHFPWKHVPMYIGAQVLASICAAFALKGVYHPFMSGGVTVPSGGYAQAFALEFIIAFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPVSGGSMNPVRTLGPAIAANNYKAIWVYLVAPVLGALAGAGTYTAVKLPEEDDDAKAKASISFRR* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1885 303 PANTHER AQUAPORIN NIP2-1 5 297 IPR034294 -
Pvu5g1885 303 CDD MIP 76 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu5g1885 303 Pfam Major intrinsic protein 74 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu5g1885 303 ProSitePatterns MIP family signature. 133 141 IPR022357 -
Pvu5g1885 303 PRINTS Major intrinsic protein family signature 76 95 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu5g1885 303 PRINTS Major intrinsic protein family signature 115 139 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu5g1885 303 PRINTS Major intrinsic protein family signature 152 171 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu5g1885 303 PRINTS Major intrinsic protein family signature 196 214 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu5g1885 303 PRINTS Major intrinsic protein family signature 227 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu5g1885 303 PRINTS Major intrinsic protein family signature 264 284 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu5g1885 303 PANTHER BNAA02G36290D PROTEIN 5 297 - -
Pvu5g1885 303 Gene3D Glycerol uptake facilitator protein. 71 296 IPR023271 -
Pvu5g1885 303 MobiDBLite consensus disorder prediction 1 34 - -
Pvu5g1885 303 SUPERFAMILY Aquaporin-like 73 290 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1885 Pvu-Chr5 40382889 40386776 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1885 3 303 Major Intrinsic Protein MIP AT1G80760 75.570 7.52e-163 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1885 K09874 - gmx:100815637 479.174