Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1883 ATGTCAGGTGAAGAAGTAGTAGCTGTTCCAGCTGAGGCACCTGCATCCATTCCCGGTGAGCCCATGGATATCATGACTGCTTTACAGCTTGTGCTGAGAAAATCTCTGGCTTACGGTGGTCTTGCAAGAGGTCTTCATGAAAGTGCTAAGATCATTGAGAAGCATACCGCACAGCTCTGCGTTCTAGCAGAAGATTGTGACCAACCTGATTATGTGAAACTGGTGAAAGCCCTTTGCGCAGAGCACAATGTTAGCCTTTTGACAGTTCCAAGTGCAAAGACCCTTGGAGAATGGGCTGGTTTGTGTAAGATTGATTCCGAGGGAAAGGCTAGGAAGGTAACTGGTTGCTCATGTGTGGTTGTTAAGGATTTTGGGGAGGAACACGAAGCCTATAATGTTGTTCTGCAGCACGTGAAAGCTAACTGA 426 0.4695 MSGEEVVAVPAEAPASIPGEPMDIMTALQLVLRKSLAYGGLARGLHESAKIIEKHTAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAN* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1883 141 PANTHER 40S RIBOSOMAL PROTEIN S12 1 140 - -
Pvu5g1883 141 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 27 120 IPR004038 -
Pvu5g1883 141 ProSitePatterns Ribosomal protein S12e signature. 27 45 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pvu5g1883 141 Gene3D - 8 141 IPR029064 -
Pvu5g1883 141 PRINTS Ribosomal protein S12E family signature 31 44 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pvu5g1883 141 PRINTS Ribosomal protein S12E family signature 45 61 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pvu5g1883 141 PRINTS Ribosomal protein S12E family signature 86 107 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pvu5g1883 141 PRINTS Ribosomal protein S12E family signature 111 124 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pvu5g1883 141 SUPERFAMILY L30e-like 21 139 IPR029064 -
Pvu5g1883 141 PANTHER 40S RIBOSOMAL PROTEIN S12 1 140 IPR000530 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1883 Pvu-Chr5 40363221 40365195 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1883 17 141 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 75.200 1.37e-67 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1883 K02951 - gmx:100500093 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1883 5 40363221 40365195 Pvu10g1666 10 42872468 42874369 PCT