Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1882 ATGCCTTCTGCGGATTCATCGTCACCTTCCTCCCAAACCATCTGTGTCACCGGCGCCGGTGGCTTCATCGCATCATGGATGGTCAAACTTCTCTTGGAGAAAGGCTACACTGTGAGAGGAACCCTCAGAAACCCAGATGATCCCAAGAACGGACACTTGAAAGAGTTTGAAGGAGCCTCCCAGAGACTAACTCTGCATAAGGTTGACCTCCTTGACCTTCACTCCGTTAGATCAGTAATTCACGGCTGCCATGGCGTCTTTCACACAGCTTCTCCCGTCACTGATAACCCCGAAGAAATGGTGGAGCCAGCGGTGAATGGAGCGAAGAATGTGATCATAGCAGCTGAAGAGGCAAAAGTGCGACGTGTGGTGTTCACCTCATCAATTGGTGCCGTCTATATGGACCCCAAAAGGAGCATTGATTTGGTAGTGGACGAGTCTTGTTGGAGTGATTTAGAATATTGCAAGAACACTAAGAATTGGTATTGCTATGGGAAGGCTGTGGCTGAGCAAGCAGCATGGGACACTGCAAAAGAGAAAGGGGTGGACTTGGTTGTAGTGAACCCAGTATTGGTTCTTGGACCATTACTACAACCAACCATCAATGCTAGCACCATTCACATCCTCAAGTACCTCACTGGCTCTGCCAAGACCTATGCAAATGCCACACAGGCTTATGTGCATGTGAGGGATGTGGCATTAGCCCACATACTTGTTTATGAGAAGTCTTCTGCCTCTGGTAGATACTTATGTGCTGAAAGCTCCCTGCACCGTGGAGAACTGGTTGAAATTCTGGCAAAGTATTTCCCTGAGTACCCAGTTCCCACCAAGTGTTCTGATGAAAAGAATCCCAGGGCAAAACCCTACATCTTTTCAAATCAGAAGCTGAAAGATTTGGGATTGGAATTCACTCCAGTGAGTCAGTGTCTATATGAAACAGTTAAGAGTCTGCAGGAGAAAGGCCACCTTCCTGTTCCTGCACAGCAGGAAGATTCAACTACAGTGAAATCATAA 1014 0.4744 MPSADSSSPSSQTICVTGAGGFIASWMVKLLLEKGYTVRGTLRNPDDPKNGHLKEFEGASQRLTLHKVDLLDLHSVRSVIHGCHGVFHTASPVTDNPEEMVEPAVNGAKNVIIAAEEAKVRRVVFTSSIGAVYMDPKRSIDLVVDESCWSDLEYCKNTKNWYCYGKAVAEQAAWDTAKEKGVDLVVVNPVLVLGPLLQPTINASTIHILKYLTGSAKTYANATQAYVHVRDVALAHILVYEKSSASGRYLCAESSLHRGELVEILAKYFPEYPVPTKCSDEKNPRAKPYIFSNQKLKDLGLEFTPVSQCLYETVKSLQEKGHLPVPAQQEDSTTVKS* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1882 337 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 9 327 - -
Pvu5g1882 337 Pfam NAD dependent epimerase/dehydratase family 14 244 IPR001509 -
Pvu5g1882 337 Gene3D - 3 337 - -
Pvu5g1882 337 CDD FR_SDR_e 15 301 - -
Pvu5g1882 337 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 318 IPR036291 -
Pvu5g1882 337 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 9 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1882 Pvu-Chr5 40358576 40361465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1882 11 277 Monolignol Biosynthesis Gene Families AT1G80820 73.783 2.67e-142 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1882 K09753 - gmx:100789070 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1882 5 40358576 40361465 Pvu10g1651 10 42771044 42775017 PCT