Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1880 ATGGATCGCGGATCCAACGGCACGGGAACGGGCACGGGTAGCAGCAGGAACATCCTGTTCAACAAGTACGAGATAGGGAAGATCCTGGGGCAGGGGAACTTCGCCAAAGTCTACCACGGGAGAAACCTCAGCACCAACGAGAGCGTGGCCGTGAAGGTCATCAAGAAAGAGAGGCTCCAGAAGGATAAGCTGGTGAAACAGATCAAACGCGAGGTCTCCGTCATGCGCCTGGTGCGCCACCCCCACATCGTGCAGCTCACGGAGGTCATGGCCAACAAAGCAAAAATCTTCATGGTCGTGGAGTACGTCAAGGGAGGAGAACTCTTCGCCAAGGTGGCCAAGGGAAAGATGAAGGAAAACATCGCCCGGAAGTACTTCCAACAGCTCATCAGCGCCGTCGACTTCTGCCACAGCCGCGGCGTCACCCACCGTGATCTGAAGCCGGAAAATCTTCTCCTCGACGAGAACGAGGACCTCAAAGTCTCGGACTTCGGCCTGTCGGCGCTGCCGGACCAGCGCCGATCCGACGGGATGCTCGTCACGCCGTGCGGCACGCCGGCCTACGTGGCGCCGGAGGTTCTGAAGAAGAAGGGCTACGACGGGTCGAAGGCTGATATATGGTCGTGTGGGGTGATCCTCTTCGCTCTGCTTTCGGGGTATTTGCCCTTTCAGGGTGAGAATGTGATGAGGATCTACAGCAAGTCTTTCAAAGCTGATTATGCATTCCCGGAATGGATTTCACCGGGGGCCAAACGCTTGATCTCGAATTTGCTGGTTGTGGACCCACAGAAGAGGTATTCCATCGCTGACATCATGAAGGATCCCTGGTTCCAAGTAGGGTTCCTGCGCCCCATTGCGTTCTCCATGAAGGAGACGGCTCTGGAGGATAACATCGACTTCAACGGGGAGGAAGATGGTAGCGAAGATGGCAACGGCAGCAACAACGATCGTGGGGAAGTGGCGCCGGCTCGTCCGTCTTACAATGCATTTGAGATAATATCCTCGTTGTCGCACGGGTTTGATCTTCGGAATTTGTTCGAGACGAGGAAGCGGTCGCCGTCGATGTTCATATCGAAGCACTCGGCGTCGACGGTGATGGCGAAGGTGGAGGCGGTGGCGAAGAAGCTGAAGTTTAGGGTGACGGGGAAGAAGGAGTTCACGGTGAGGATGCAGGGGGAGACGGAAGGGAGGAAGGGGAAGGTGGGGATGACAGTGGAGGTGTTCGAGGTGGCGCCGGAGGTTGCGGTGGTGGAGTTCTGGAAGTCAGCCGGAGACACTCTTGAATACATAAAGCTGTGTGAGGAAGAGGTGAGGCCTTCACTGAAAGACATTGTTTGGAGTTGGCAAGGAGACTGCAATTCCCATTCCCAGCAGTGA 1377 0.5614 MDRGSNGTGTGTGSSRNILFNKYEIGKILGQGNFAKVYHGRNLSTNESVAVKVIKKERLQKDKLVKQIKREVSVMRLVRHPHIVQLTEVMANKAKIFMVVEYVKGGELFAKVAKGKMKENIARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEDLKVSDFGLSALPDQRRSDGMLVTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILFALLSGYLPFQGENVMRIYSKSFKADYAFPEWISPGAKRLISNLLVVDPQKRYSIADIMKDPWFQVGFLRPIAFSMKETALEDNIDFNGEEDGSEDGNGSNNDRGEVAPARPSYNAFEIISSLSHGFDLRNLFETRKRSPSMFISKHSASTVMAKVEAVAKKLKFRVTGKKEFTVRMQGETEGRKGKVGMTVEVFEVAPEVAVVEFWKSAGDTLEYIKLCEEEVRPSLKDIVWSWQGDCNSHSQQ* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1880 458 PANTHER - 15 455 - -
Pvu5g1880 458 Pfam NAF domain 326 381 IPR004041 GO:0007165
Pvu5g1880 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Pvu5g1880 458 Pfam Protein kinase domain 23 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1880 458 PANTHER CBL-INTERACTING PROTEIN KINASE 16 15 455 - -
Pvu5g1880 458 SMART serkin_6 23 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1880 458 ProSiteProfiles NAF domain profile. 322 347 IPR018451 GO:0007165
Pvu5g1880 458 MobiDBLite consensus disorder prediction 299 321 - -
Pvu5g1880 458 SUPERFAMILY Protein kinase-like (PK-like) 19 278 IPR011009 -
Pvu5g1880 458 ProSitePatterns Protein kinases ATP-binding region signature. 29 56 IPR017441 GO:0005524
Pvu5g1880 458 Gene3D Transferase(Phosphotransferase) domain 1 14 326 - -
Pvu5g1880 458 CDD CIPK_C 328 442 - -
Pvu5g1880 458 ProSiteProfiles Protein kinase domain profile. 23 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1880 458 Gene3D Kinase associated domain 1, KA1 327 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1880 Pvu-Chr5 40338318 40340514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1880 16 458 CBL-interacting serine-threonine protein kinases AT5G10930 60.225 0.0 554
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Pvu5g1880 Pkinase 2.2e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1880 - - gmx:100804244 763.066