Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1879 ATGGATTATTCATCACGGATTAACACTTCCTTGGATCTCAATATTATTCCTCTCAGGCTTCATCAAGAACTTCCCAAAAAGGAGGTGGAACATAATTTTTTCTCTCTGGGGCTGAAGAAATCTTCTGTAAAAGAACAGTCTTCTGGTGCCTTGGTGGAGGAGCTGAAGCGGGTGAGTGCAGAAAACAAGAAATTGAGCGAAATGCTCACGGAGATGTGTGAGAACTACAACGCTTTGCGAAACAATCTGATGGAATATATGAGGAAGAATCCTGAGAAAGAGCTCAGCTCATCCAAGAAAAGGAAGTCTGAAAGCAGCAACAATAATAGCACTCCGATGGGCATCAACGGAAACTCTGAGAGCAGCTCAACCGATGAAGAATCATGCAAGAAACCAAAGGAGGAAATCAAGACAACAGTTTCAAGAGTTTACGTGAGGACGGAAGCATCTGATACAAGCCTGATTGTGAAAGATGGGTATCAATGGAGGAAATATGGACAAAAGGTGACCAGGGATAACCCTTCTCCAAGAGCTTACTTCAAGTGCTCTTTTGCTCCAAGTTGCCCGGTCAAAAAGAAGGTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTTGCAACTTATGAAGGAGAGCACAATCATCCCCACCCATCTCAAATGGAGGTAACAACAGGCTCCAACCGTGGTGTGGCCCCATGTTCAGGGTCTCTTGGCTCTTCCGCACCAACAGTTACCCTTGACTGGACAAAATCCAAGTCCAGCAGCGATTCCAAGAATGCAACTCCCAAAATTGATGCACCAGAAGTCCCTCAGGTTTTGGTAGAACAGATGGCCACTTCCTTGACTAAGGATCCTAACTTCAGAGCAGCACTAGTTGCCGCAATCTCAGGAAAAATGTTGCACAATAATTGA 912 0.4474 MDYSSRINTSLDLNIIPLRLHQELPKKEVEHNFFSLGLKKSSVKEQSSGALVEELKRVSAENKKLSEMLTEMCENYNALRNNLMEYMRKNPEKELSSSKKRKSESSNNNSTPMGINGNSESSSTDEESCKKPKEEIKTTVSRVYVRTEASDTSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVDDQSVLVATYEGEHNHPHPSQMEVTTGSNRGVAPCSGSLGSSAPTVTLDWTKSKSSSDSKNATPKIDAPEVPQVLVEQMATSLTKDPNFRAALVAAISGKMLHNN* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1879 303 Gene3D WRKY domain 138 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu5g1879 303 Coils Coil 55 89 - -
Pvu5g1879 303 MobiDBLite consensus disorder prediction 242 261 - -
Pvu5g1879 303 PANTHER TRANSCRIPTION FACTOR 1 303 - -
Pvu5g1879 303 MobiDBLite consensus disorder prediction 242 267 - -
Pvu5g1879 303 SUPERFAMILY WRKY DNA-binding domain 153 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu5g1879 303 MobiDBLite consensus disorder prediction 102 123 - -
Pvu5g1879 303 Pfam WRKY DNA -binding domain 157 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu5g1879 303 ProSiteProfiles WRKY domain profile. 151 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu5g1879 303 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 303 IPR044810 GO:0003700
Pvu5g1879 303 SMART WRKY_cls 156 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu5g1879 303 MobiDBLite consensus disorder prediction 91 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1879 Pvu-Chr5 40322573 40324669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1879 4 303 WRKY Transcription Factor Family AT1G80840 54.430 1.64e-104 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pvu5g1879 WRKY 2.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1879 - - gsj:114388658 490.345