Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1876 ATGTGGAGTTCAACTTCAAGCGTAGCGATTGCAATTGCAGCACCTTCCTCCGACGAGGATCCCACCGAATCCTCTTCGTTTTCCTTCTCCACCGCTCTCTTCAATTTCTCTTCTGGAAACCCTAGAATCGAGGAGACGCGCGGCCTCATGCATCTCTTCCCCGACGACACTCCGGCTACTCTTCCGGTTGGACGCAAACCTCTGGTTTGCGTTGTTGGCGTTCCCAATCACATGACCTATGCGGATTTCTGTCAGTTCAGTGGTTCCTTCATTCAGCACATGCTGGAGATGCGCATTGTTAGGATGGATGGTATGGAGGATCAGTACAGTGTCTTGATTCGCTTTGACTCCCAAGAATCCACCGACACCTTCTACAAGCACTACCATGGCCGCCGATTCTCCTCTCTCGAGGTTGAGGTTTGCCGAGTTCTTTTCACGTTAGACGTGCAGTACACTGGTTCCATTGAACACGCACAACCCTCAAATGCTAGTTCAACTGAACAGCCTACTTGTCCTGTTTGTCTTGAACGATTAGATCAGGACACCGGTGGAATTCTTACAACTATATGCAACCATTCTTTCCATTGTTCTTGTATTTCAAAATGGGCAGATTCTTCTTGTCCTGTATGCCGCTATTGCCAGCAGCAAGCTGAAAAATCGATATGTTTTGTTTGTCAAACCACCGAGAACCTGTGGATATGTGTTATATGTGGGTATGTTGGCTGCGGAAGATATAAGGGAGGTCATGCTATAATACACTGGAAAGAGACACAGCATTGCTACTCCCTGGAAGTGGAGACCAAACGTGTGTGGGATTATGTGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACTGATGGGAAATTGGTTGAGCTGAACACTAACTGTGCACATGCAGACAATGGATGCGGAAGTTGCAGCTGTGAAGATAATGCCATGAGTGAGGCTATGCTTAATAGTAAAGTTGAAGCTATTGTCAATGAGTACAATGAATTGCTTGCTACTCAACTTGAAAACCAAAAAATATATTTCGAATCCTTATTACAAGAAGTAAAAGAAGAATCGGAAAGAAAAATTTCCAAAGCTGTTCAGAAGGCTATCAGTCTTAAACAGCAGAAGATTCAGTCCAAGGTTGACAGATGTAAGAAAGAGAAGAAATTTCTGGATGATCTTAATGAGAATCTTGTGAAAAATGAGGACATTTGGAAAGCAAAGATACTTGAGATTGAAGAGAGGGAGAGAAAAGCTACGAGAGTGATGGAGGATAGAGTAGCGGACCTGGAAAAGCAGCTTGGAGATCTCATGGTTTGTCTTGAGGGGGGGAAGATGGAAGGAGAGCTACCCGTTTCAGATGATGAGATTAAAGAAGGGACTGTCTTTCAAAAATCGAAAGAATCATCCTCAGTTAGTACTTCTCAAGCATGCATAACAGAAGAATGA 1446 0.4391 MWSSTSSVAIAIAAPSSDEDPTESSSFSFSTALFNFSSGNPRIEETRGLMHLFPDDTPATLPVGRKPLVCVVGVPNHMTYADFCQFSGSFIQHMLEMRIVRMDGMEDQYSVLIRFDSQESTDTFYKHYHGRRFSSLEVEVCRVLFTLDVQYTGSIEHAQPSNASSTEQPTCPVCLERLDQDTGGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGYVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNTNCAHADNGCGSCSCEDNAMSEAMLNSKVEAIVNEYNELLATQLENQKIYFESLLQEVKEESERKISKAVQKAISLKQQKIQSKVDRCKKEKKFLDDLNENLVKNEDIWKAKILEIEERERKATRVMEDRVADLEKQLGDLMVCLEGGKMEGELPVSDDEIKEGTVFQKSKESSSVSTSQACITEE* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1876 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 293 IPR013083 -
Pvu5g1876 481 CDD RING-H2_BRAP2 169 212 - -
Pvu5g1876 481 ProSiteProfiles Zinc finger UBP-type profile. 205 298 IPR001607 GO:0008270
Pvu5g1876 481 Coils Coil 336 374 - -
Pvu5g1876 481 PANTHER BRCA1-ASSOCIATED PROTEIN 16 472 - -
Pvu5g1876 481 Pfam BRCA1-associated protein 2 62 158 IPR011422 -
Pvu5g1876 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 213 IPR013083 -
Pvu5g1876 481 Pfam Ring finger domain 170 211 IPR001841 -
Pvu5g1876 481 ProSiteProfiles Zinc finger RING-type profile. 171 211 IPR001841 -
Pvu5g1876 481 MobiDBLite consensus disorder prediction 463 481 - -
Pvu5g1876 481 MobiDBLite consensus disorder prediction 460 481 - -
Pvu5g1876 481 SMART Zf_UBP_1 221 270 IPR001607 GO:0008270
Pvu5g1876 481 CDD RRM_BRAP2_like 69 150 - -
Pvu5g1876 481 SUPERFAMILY RING/U-box 187 286 - -
Pvu5g1876 481 Pfam Zn-finger in ubiquitin-hydrolases and other protein 222 281 IPR001607 GO:0008270
Pvu5g1876 481 SMART ring_2 171 210 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1876 Pvu-Chr5 40303954 40307201 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1876 167 211 C3H Transcription Factor Family AT1G72220 46.809 5.19e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1876 K10632 - gmx:100794688 842.802