Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1875 ATGGAGGAAAACCAGTGGGGGAACTGCTCCTCTCACATGGAAATGGAGGACGAGGTGTTGAATGAATGTTTGTGCCAGACGAACCCCTTCGACGAAGAGTTTCTTAGGGATATTCTGCAGCAGCCGGAGGCAGAAGAGGGTGGTGATGACATGATGATGATGATGAAGAACAAGAACAGTAACTCATCATCCATGATGAATCTTTGTGGTGAAGAGAATAAGAAGAAATCTGGTTATATACTGTCTTTTGAGGGTTTGACTGGTTGGAAAGACGTGTCTGAGAACTCGAACTCAACAACAAGGAGCAACCAAGGAACGAAGAAGACTCGAAGCGCTTCTGAATCAATGGATCACATCATGTCGGAGAGAAAAAGGAGACAGGAACTCACCAGGAAATTCATAGCACTTGCTTCCACCATCCCTGGCTTGAAGAAGATGGACAAGGCACATGTGCTAAGAGAAGCAATGAATTACGTGAAGCAGCTGCAAGAACGTGTGGAAGTGCTGGAAGAAGATATCCAGAAGAACAATGCAGAATCAGCGATCACCATAACAAGATCTCATCTCTGCATTGATGACACAAACAGTGATGAATGCTATGGCTCCAATGAAGCAGTTCCTCCTGAAGTTGAAGCCAGAGTCCTTGGGAAGCAAGTGTTGATCAAGATTCATTGTGGCAAACAAAAGGGAATTCTGCTTAAAATAATGTCTCAGCTTGAACATCTTCATCTCTACATATCCACTAGCAATGTCTTGCCCCTTGGAAATACCATTGACATCACCATAATTGCTCAGATGGGTGATAAATACAACATGGTAGTGAAGGATCTAGTGAAAGAATTGAGACGAGTGGCTATGATGAAGTTGTGTGTGTCACAATGA 882 0.4354 MEENQWGNCSSHMEMEDEVLNECLCQTNPFDEEFLRDILQQPEAEEGGDDMMMMMKNKNSNSSSMMNLCGEENKKKSGYILSFEGLTGWKDVSENSNSTTRSNQGTKKTRSASESMDHIMSERKRRQELTRKFIALASTIPGLKKMDKAHVLREAMNYVKQLQERVEVLEEDIQKNNAESAITITRSHLCIDDTNSDECYGSNEAVPPEVEARVLGKQVLIKIHCGKQKGILLKIMSQLEHLHLYISTSNVLPLGNTIDITIIAQMGDKYNMVVKDLVKELRRVAMMKLCVSQ* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1875 293 MobiDBLite consensus disorder prediction 91 110 - -
Pvu5g1875 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 113 162 IPR011598 GO:0046983
Pvu5g1875 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 117 182 IPR036638 GO:0046983
Pvu5g1875 293 MobiDBLite consensus disorder prediction 91 121 - -
Pvu5g1875 293 SMART finulus 119 168 IPR011598 GO:0046983
Pvu5g1875 293 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 21 291 - -
Pvu5g1875 293 Coils Coil 152 179 - -
Pvu5g1875 293 Pfam Helix-loop-helix DNA-binding domain 118 163 IPR011598 GO:0046983
Pvu5g1875 293 PANTHER BHLH TRANSCRIPTION FACTOR 21 291 - -
Pvu5g1875 293 Gene3D - 103 179 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1875 Pvu-Chr5 40301041 40302783 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1875 92 282 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.226 2.51e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu5g1875 HLH 7.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1875 - - gmx:100809223 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1875 5 40301041 40302783 Pvu10g1645 10 42721159 42723365 PCT
Pvu10g1644 10 42712384 42715399 Pvu5g1875 5 40301041 40302783 PCT