Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1874 ATGGACTTTCTCCTTTCCCCTGCTTTCTACTCTCCGATGGAACAAGCATGGGAGAATTGGTCTCTTCAAATGGAAAAGGGTGATGATGGGTGTAAGGATCTGGTGTTGGAAGAGTGCCACACAGAAGAAGAAGAGTTTCTCAGGGACATTCTTGGTGACCCTGGTTTTTGTTCTGAAACTCGAAGTCACCACAACTCTGCAACGCCCACTGATGGTAGCAGTTTATCCTCCGATGAGACGCTAGCAATGGCAGCAGCTTCCAATGTCAATATACCTCCCCAGAAGTCCCACATCGCTGATTCCTCTCCAAGAACATATATTTTGTCTTTTGACACCTCCACCATTATCCCACCCACCCCTCATTTCGACACCTCTAAATCATCATCCACCTTCACTCTCTCCTCCAAAAAACGCCACCGGAATCTCAGCTCAGAACAGCCAAAACCAAACTCCGCCACCGTAAAGAGGGGCAGAAACGGCTCCCTTGACCACATCATGGCCGAAAGAAAAAGGAGACAAGAACTCGCGGAGAGGTTCATAGCACTTTCAGCCACTATCCCTGGCCTCAAGAAGACGGACAAGAGTTCAATACTTTGCGAAGCGATTAGTTACGTGAAAGAGCTTCAAGGACGCGTGACGGAGCTTGAAGAGAGAAACAAGAGAGGGAAAGAAGCAGTGATGATCCTGAACAAGAGTGATGAAGATAGCAGTAACTCCAGTGAAACAGATTCCAAGGATTGGTGCAGAATGCTCCCTGATATTGAAGCAAGAGTTATGGAGAATGAGGTGCTCATTGAGATCCATTGCGAGAAGGAAGAAGGAGTTGAGCTCAAATTATTGGACCATCTTGAAAACCTTCATCTCTGTGTCACCGCCACCAGCGTTTTGCCCTTCGGGAATTCAACTCTTGGCATCACCATTGTCGCTCAGATGGGTGACGCATACAAGATGACAATGAAGGAGGTAGTGAGAAATCTAAGGGAAGTGCTGATGAATGAAATCAACATCCATGGCGATCCGTACTAG 1026 0.4717 MDFLLSPAFYSPMEQAWENWSLQMEKGDDGCKDLVLEECHTEEEEFLRDILGDPGFCSETRSHHNSATPTDGSSLSSDETLAMAAASNVNIPPQKSHIADSSPRTYILSFDTSTIIPPTPHFDTSKSSSTFTLSSKKRHRNLSSEQPKPNSATVKRGRNGSLDHIMAERKRRQELAERFIALSATIPGLKKTDKSSILCEAISYVKELQGRVTELEERNKRGKEAVMILNKSDEDSSNSSETDSKDWCRMLPDIEARVMENEVLIEIHCEKEEGVELKLLDHLENLHLCVTATSVLPFGNSTLGITIVAQMGDAYKMTMKEVVRNLREVLMNEINIHGDPY* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1874 341 MobiDBLite consensus disorder prediction 118 162 - -
Pvu5g1874 341 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 13 336 - -
Pvu5g1874 341 SMART finulus 165 214 IPR011598 GO:0046983
Pvu5g1874 341 Gene3D - 151 224 IPR036638 GO:0046983
Pvu5g1874 341 MobiDBLite consensus disorder prediction 118 137 - -
Pvu5g1874 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 227 IPR036638 GO:0046983
Pvu5g1874 341 Coils Coil 205 225 - -
Pvu5g1874 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Pvu5g1874 341 Pfam Helix-loop-helix DNA-binding domain 164 209 IPR011598 GO:0046983
Pvu5g1874 341 PANTHER BHLH TRANSCRIPTION FACTOR 13 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1874 Pvu-Chr5 40289878 40292459 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1874 156 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.865 5.79e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu5g1874 HLH 1.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1874 - - pvu:PHAVU_005G181300g 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1874 5 40289878 40292459 Pvu10g1644 10 42712384 42715399 PCT
Pvu10g1643 10 42700291 42705130 Pvu5g1874 5 40289878 40292459 PCT