Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1871 ATGAATCTTCTTGTTCTCTTCCTACCTGTTTGGGTGCTGAGCATTTCTCTTTCCTCACCAATTCTTCATGCTGCATCCTCCATTTCTGTTTCTCAAAATGCACAAGCTGAATCTCCAGGTATTCAGGAGGTTAGAGCAGTGCACCACCAGAATTTGGATAAGAGAATTCTAATTGGGTTAGTTGCTTGTTCTGGTCTTCTTGGTGGAGTCTTCCTAATCATACTTTATGTCTGGTTCTGTCGACATAAAACCTTAAAACACTCGAGAAGTAAAAGCCAAGATACCACTGAGGCTGCAAAAGGGGAAACCTTAAGCTCGGTTAATGCTAAACTTAACTACTCTAGGATGGCAGATAAGAAGAGTTCAGTTGCTATTTTTGAGTATCAGATGTTAGAGGCTGCCACGAACAGCTTTAGCACAAGCAGTATTATAAGAGAGAGTGGTTCAAGAATCATTTACAGAGCTAATTTTGATGAGCATTTCCAGGCAGCTGTGAAGAAAGCAGACAGTGATGCTGATAAAGAATTTGAGAATGAAGTGAGTTGGTTGAGCAAGATGCGCCATCAGAATATCATAAAACTTATGGGTTATTGTATTCATGATCAATCGAGGTTTCTTGTTTATGAACTGATGGAGAATGGGTCTCTGGAAACTCAATTGCATGGGCCTAATCGAGGGTCATCTTTAACCTGGTATCTCAGGTTAAGAATTGCTGTTGATGTTGCCAGAGCATTAGAATATCTCCATGAGCACTCAAATCCTCCTGTGGTTCATCGAGACTTAAAATCTTCCAATGTTCTTCTGGATTCTAACTTTAATGCCAAGTTATCAGATTTTGAATTTGCTATGGTTTCTGGAATGCAACATAAGAACATGAAGATGTCAGGAACTTTAGGATACGTGGCCCCTGAGTACATATCACATGGTAAACTAACTGACAAGAGCGATGTCTACGCTTTTGGGGTTGTCCTTCTAGAACTCCTAACCGGAAGAAAACCCATTGTAAACATGACCTCACACCAATATCAATCCCTTGTATCATGGGCCATGCCTCAGCTAACTGACAGATCGAAGCTTCCAAGTATTCTTGATCCTGTTATCAGAGACACAATGGATTGGAAGCATTTATATCAGGTTGCTGCAGTGGCTGTACTCTGCGTGCAAGCAGAACCAAGTTATAGGCCATTAATAACAGACGTGCTGCACTCTCTCATCCCTTTGGTACCTGTTGAGCTTGGAGGGTCACTAAGAATTACGGAACCAATCAGCTCAGAGAACTCTCATTGA 1287 0.4134 MNLLVLFLPVWVLSISLSSPILHAASSISVSQNAQAESPGIQEVRAVHHQNLDKRILIGLVACSGLLGGVFLIILYVWFCRHKTLKHSRSKSQDTTEAAKGETLSSVNAKLNYSRMADKKSSVAIFEYQMLEAATNSFSTSSIIRESGSRIIYRANFDEHFQAAVKKADSDADKEFENEVSWLSKMRHQNIIKLMGYCIHDQSRFLVYELMENGSLETQLHGPNRGSSLTWYLRLRIAVDVARALEYLHEHSNPPVVHRDLKSSNVLLDSNFNAKLSDFEFAMVSGMQHKNMKMSGTLGYVAPEYISHGKLTDKSDVYAFGVVLLELLTGRKPIVNMTSHQYQSLVSWAMPQLTDRSKLPSILDPVIRDTMDWKHLYQVAAVAVLCVQAEPSYRPLITDVLHSLIPLVPVELGGSLRITEPISSENSH* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1871 428 Pfam Protein kinase domain 164 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1871 428 PANTHER RECEPTOR-LIKE KINASE 24 419 - -
Pvu5g1871 428 PANTHER OS01G0253100 PROTEIN 24 419 IPR045271 GO:0004714|GO:0006468
Pvu5g1871 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Pvu5g1871 428 Gene3D Transferase(Phosphotransferase) domain 1 211 409 - -
Pvu5g1871 428 SMART serkin_6 138 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1871 428 ProSiteProfiles Protein kinase domain profile. 138 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1871 428 Gene3D Phosphorylase Kinase; domain 1 98 210 - -
Pvu5g1871 428 SUPERFAMILY Protein kinase-like (PK-like) 114 404 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1871 Pvu-Chr5 40269074 40272702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1871 1 350 Receptor kinase-like Gene Family AT1G80640 45.257 7.66e-104 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Pvu5g1871 Pkinase 2.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1871 - - gmx:100811188 733.791