Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1867 ATGACCACTTCACTTTCACATTCTGAAAGACACTTCACCAACAAGTTTGAACCACCAATCACCATCATCATGGCTAGACCCCAACAACGCTATCGTGGTGTCCGCCAGAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGTCACCCTCTTTTGAAAACTAGAATATGGCTGGGAACGTTTGAATTAGCAGAAGATGCAGCCAGAGCATACGATGAAGCAGCAAGGTTAATGTGTGGACCAAAAGCACGCACCAATTTCCCCTACAATCCTAACGATCCACAGTCATCTTCATCGAAGCTCCTTTCTGCAACTCTCACTGCGAAGCTACACAAGTGTCACATGGCCTCTCTTTCCCTTCAGAGGAAGCAGAAGGAATCGCAAGAAATGGCTGAAGGGTCATCCAATTCAGGCAATGCTGTTGCAGGAACGAGCGAGGACACAACAGGGTTCAGATGGGCAGAGAAGAGACACGAAGAAGTGCAGTGGCTAGAAGAAGAGCATGCTGAAGTGGGAGAAGCAGAACAACAACAGTTTCAGCCAGTTCTTGAAGATGATCACATTGAACAAATGATACAGGAGCTTCTTGATTATGGCTCAATGGAGCTTAGTTCTGTTGACTCAGTCTAA 627 0.4689 MTTSLSHSERHFTNKFEPPITIIMARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFELAEDAARAYDEAARLMCGPKARTNFPYNPNDPQSSSSKLLSATLTAKLHKCHMASLSLQRKQKESQEMAEGSSNSGNAVAGTSEDTTGFRWAEKRHEEVQWLEEEHAEVGEAEQQQFQPVLEDDHIEQMIQELLDYGSMELSSVDSV* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1867 208 Gene3D AP2/ERF domain 29 88 IPR036955 GO:0003700|GO:0006355
Pvu5g1867 208 CDD AP2 29 89 IPR001471 GO:0003700|GO:0006355
Pvu5g1867 208 MobiDBLite consensus disorder prediction 121 146 - -
Pvu5g1867 208 PANTHER ETHYLENE RESPONSE FACTOR 24 204 - -
Pvu5g1867 208 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Pvu5g1867 208 MobiDBLite consensus disorder prediction 121 145 - -
Pvu5g1867 208 SUPERFAMILY DNA-binding domain 30 89 IPR016177 GO:0003677
Pvu5g1867 208 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
Pvu5g1867 208 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Pvu5g1867 208 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Pvu5g1867 208 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Pvu5g1867 208 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1867 Pvu-Chr5 40253016 40253942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1867 24 205 AP2-EREBP Transcription Factor Family AT5G25190 63.934 6.90e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu5g1867 AP2 1.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1867 - - gmx:100812021 292.352