Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1866 ATGGACCTTATGTGGTCAGAGCCAAGTCCATCATCTGAAAATGATCTGAACATTCCTTTTTCAGAGAAATCTGCACCTTGCTCAAAGCCTGTGCTACCTTCCATGGATATCCAAAAGGAGAGGAAGGAGGACAAAGAACATCCCTATGAGTCTGCTTCAGCACACCTTGCACTGGATTCATGTGATGAGTCAAAGCCAGAACTCAACCTCATCAACTGCTTAGATACAAATTTGTCCATGAACTCCTCAGAATCTATTCATGGAGGAGGACATGGTGATGCATTGGAGCCAAGGATATTCTCATGCAACTACTGCCAAAGGAAGTTTTATAGTTCACAGGCCCTTGGAGGACACCAAAATGCACATAAGCGTGAAAGAACTTTGGCAAAAAGAGGACACAAAGCTGGTGCTGCAGTTCCAATAGATTTTGCACACAGGTATTCCAGCATGGCTTCTCTGCCTTTGCATGGCTCCTATAACAGGTCACTTGGAATTCAGGCGCATTCTATGATCAACAAACGCTCTTTTCAAACACAAACACCTTGTTTTGGTTTTTCTCATTCTCATGCTCATAAGGGGTGGCAGAAGCTGCCTTTGTACTCACCACATTCAACTGGGACAGAAACTGCATCCCCCTTTTCTCCAAGGCTGGTGGCAGAGGGATTTGGAGGCTACTGGTTGGATAGTGTTAACCATTTGAAGACTGAGCAAGAGGAGTTGCACAAGCTTGACTTGTCCCTCAAACTCTAA 750 0.448 MDLMWSEPSPSSENDLNIPFSEKSAPCSKPVLPSMDIQKERKEDKEHPYESASAHLALDSCDESKPELNLINCLDTNLSMNSSESIHGGGHGDALEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHKAGAAVPIDFAHRYSSMASLPLHGSYNRSLGIQAHSMINKRSFQTQTPCFGFSHSHAHKGWQKLPLYSPHSTGTETASPFSPRLVAEGFGGYWLDSVNHLKTEQEELHKLDLSLKL* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1866 249 MobiDBLite consensus disorder prediction 1 51 - -
Pvu5g1866 249 SUPERFAMILY beta-beta-alpha zinc fingers 97 127 IPR036236 -
Pvu5g1866 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 127 IPR013087 -
Pvu5g1866 249 MobiDBLite consensus disorder prediction 7 21 - -
Pvu5g1866 249 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Pvu5g1866 249 PANTHER ZINC FINGER PROTEIN 1 35 249 - -
Pvu5g1866 249 MobiDBLite consensus disorder prediction 35 51 - -
Pvu5g1866 249 PANTHER ZINC FINGER PROTEIN JAGGED 35 249 IPR045320 GO:0003700
Pvu5g1866 249 Gene3D Classic Zinc Finger 80 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1866 Pvu-Chr5 40245190 40246385 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1866 32 249 C2H2 Transcription Factor Family AT5G10970 37.698 1.37e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu5g1866 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1866 - - vun:114185863 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1866 5 40245190 40246385 Pvu5g1866 5 40245190 40246385 ECH