Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1848 ATGGCCGTTGCATCGCTCTCTCTGCTTCCTCCCTCCACTTGTCCATGCTTCTGCGGCACCGTTCATCTCCGCTCTCACAGCAGCTTCATTTCCATTCATTCTCCTTCTTCTTCCTCTTCCTCTTCCTTCTCCTCGATTTCCAATCCCAACCCCGCTCCTACGCGCCGCCGCTTCCACACTGTCTTCGCCGCTTCCTCCGACTACTATTCCACTCTCGGAGTCTCCAAATCCGCCACCGGAAAGGAAATCAAAGCCGCTTATCGGAAGTTAGCTCGTCAGTATCATCCTGACGTGAATAAGGAGCCCGGGGCGACTGAAAAGTTCAAAGAGATCAGTGCTGCCTACGAGGTGCTATCAGACGATAAAAAGAGGGCTTTATATGATCAATATGGCGAGGCAGGACTTAAGAGTGCAGTTGGAGGAGGCTCAAGTGCCTATACGACAAATCCATTTGATTTATTTGAGACATTTTTTGGGCAAAGTATGGGTGGCTTTGGTGGCACGGATCCAACTGGATTTGGAACTCGTCGTCGTAGTACCGTTACTAAGGGTGAAGACATTCGGTATGATTTTTCCTTGAAGTTTTCTGAGGCAATTTTTGGAACAGATAAAGAGTTCGATCTTTCTCATTTGGAAACATGTGAAGTCTGTACTGGTACCGGAGCAAAAATAGGCTCCAAGATGAGAGTATGTTCAACTTGTGGTGGGAGGGGTCAGGTGATGAGGACTGAGCAAACACCTTTTGGGTTGTTCTCACAGGTTTCAGTATGTCCAAGCTGTGTAGGGGATGGAGAAGTCATATCTGAATATTGTCGTAAATGCAATGGTGAAGGACGAATACGGGTTAAGAAAAGTATTAAAGTTAAAGTTCCTGCTGGTGTTAGCCCAGGCACTATTTTAAGAGTTCCTGGGGAGGGTGATGCTGGACCAAGAGGGGGCCCTCCTGGAGATCTTTACGTCTATCTTGAAGTGCAAGAGATGCCTGGAATTCAAAGGGATGACATTAATCTCTGCTCAACATTATCAATCAGTTATCTAGATGCAATACTGGGGATTGTTGTGAAGGTAAAGACAGTTGAAGGCATTTCGGACCTACAAATACCTGCTGGTACCCAACCTGGAGATGTCCTCGTCCTTGCAAGAAAAGGTGTACCAAAATTAAATAAACCATCAATACGTGGTGACCACTTATTCACTATTAAAGTTTCGATACCAAAACGTATTAGTACAAAGGAGCGTGAGTTGCTTGAAGAACTTGCTTCTCTAGGTGACACAAGCAGACGTTTAAAATCCCGGCCTAAGACCCACTCTTCAACAGGTGGTACGGAAATTCCTACACTTCGAAAGGATGAAAGTCCAACAGCAACAGTGGAAGAAAAAAGTGAGAAATCAGAAGACGAAAACGATGTATGGAAAAAATTGAAGGGCTTTGCTGGATCTGTGGAAATGGAGCTTTAA 1458 0.454 MAVASLSLLPPSTCPCFCGTVHLRSHSSFISIHSPSSSSSSSFSSISNPNPAPTRRRFHTVFAASSDYYSTLGVSKSATGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRALYDQYGEAGLKSAVGGGSSAYTTNPFDLFETFFGQSMGGFGGTDPTGFGTRRRSTVTKGEDIRYDFSLKFSEAIFGTDKEFDLSHLETCEVCTGTGAKIGSKMRVCSTCGGRGQVMRTEQTPFGLFSQVSVCPSCVGDGEVISEYCRKCNGEGRIRVKKSIKVKVPAGVSPGTILRVPGEGDAGPRGGPPGDLYVYLEVQEMPGIQRDDINLCSTLSISYLDAILGIVVKVKTVEGISDLQIPAGTQPGDVLVLARKGVPKLNKPSIRGDHLFTIKVSIPKRISTKERELLEELASLGDTSRRLKSRPKTHSSTGGTEIPTLRKDESPTATVEEKSEKSEDENDVWKKLKGFAGSVEMEL* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1848 485 Pfam DnaJ C terminal domain 187 405 IPR002939 -
Pvu5g1848 485 PANTHER MOLECULAR CHAPERONE HSP40/DNAJ FAMILY PROTEIN 55 432 - -
Pvu5g1848 485 Pfam DnaJ domain 67 128 IPR001623 -
Pvu5g1848 485 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Pvu5g1848 485 Hamap Chaperone protein DnaJ [dnaJ]. 64 451 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Pvu5g1848 485 MobiDBLite consensus disorder prediction 452 468 - -
Pvu5g1848 485 Gene3D - 330 422 - -
Pvu5g1848 485 SUPERFAMILY HSP40/DnaJ peptide-binding domain 182 334 IPR008971 GO:0006457|GO:0051082
Pvu5g1848 485 SMART dnaj_3 66 123 IPR001623 -
Pvu5g1848 485 CDD DnaJ_C 185 408 - -
Pvu5g1848 485 Gene3D - 184 320 - -
Pvu5g1848 485 TIGRFAM DnaJ_bact: chaperone protein DnaJ 67 421 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Pvu5g1848 485 ProSiteProfiles Zinc finger CR-type profile. 201 283 IPR001305 GO:0031072|GO:0051082
Pvu5g1848 485 CDD DnaJ_zf 214 278 IPR001305 GO:0031072|GO:0051082
Pvu5g1848 485 PRINTS DnaJ domain signature 69 87 IPR001623 -
Pvu5g1848 485 PRINTS DnaJ domain signature 87 102 IPR001623 -
Pvu5g1848 485 PRINTS DnaJ domain signature 103 123 IPR001623 -
Pvu5g1848 485 PRINTS DnaJ domain signature 123 142 IPR001623 -
Pvu5g1848 485 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 55 432 - -
Pvu5g1848 485 CDD DnaJ 67 120 IPR001623 -
Pvu5g1848 485 SUPERFAMILY HSP40/DnaJ peptide-binding domain 331 416 IPR008971 GO:0006457|GO:0051082
Pvu5g1848 485 Gene3D DnaJ domain 63 169 IPR036869 -
Pvu5g1848 485 Gene3D - 214 278 - -
Pvu5g1848 485 SUPERFAMILY Chaperone J-domain 63 172 IPR036869 -
Pvu5g1848 485 MobiDBLite consensus disorder prediction 426 468 - -
Pvu5g1848 485 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 201 281 IPR036410 -
Pvu5g1848 485 Pfam DnaJ central domain 214 278 IPR001305 GO:0031072|GO:0051082
Pvu5g1848 485 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1848 Pvu-Chr5 40111512 40118672 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1848 68 130 C2H2 Transcription Factor Family AT1G74250 47.826 1.81e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1848 K03686 - gmx:100798567 804.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1848 5 40111512 40118672 Pvu5g1848 5 40111512 40118672 ECH