Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1809 ATGGAGGCACAAGCAGCAGCACAGACACACCATCTCCGAAACTCAACAGAATCAGAAAAGCATAACAGTAATAATAATCACCACAGTAATCATAACAATAATCGTAACTTGATGGTGAAGACTGAGTTGTGCAGGAGATTCAGGAGAGGCGTGTGCGGTCATGGAATCAAATGCGATTACGCTCACAGCGTCGGGGAGCTCCGTCGCCAACCGAAGCTGTGCAGATTGTTCCTTCAAAACAAACACTGCCCCTACGGACGCACCTGTCGCTACCTGCATTCCGCCGCAACAGCGCTACCACCGCCGCCGTCAACTTTTCCGATTCCAAATCCACAATCTCAACCAGAAGTAGGGCAACTTGATCGCTCCTCTTCTGCCGAATACAAGAGAATGCAAACTTATGCTGCTGTTCCAAGTGATAGCTACCCTTATGCAGAAAATAGTACAATGCATACTGCTATTGCTGCTACTGCAAATGCCTCAACTAGCACTCTGGCAGCTGGCTCTTCCCATAACAATGAACCATATGCTGTGAAGTTCGTGTTCAAGAAAAACGAACTAAAAAAGATCAATCGCATCTATGCTGATTGGATTTCAGATTTTTCCCGCTGA 612 0.4657 MEAQAAAQTHHLRNSTESEKHNSNNNHHSNHNNNRNLMVKTELCRRFRRGVCGHGIKCDYAHSVGELRRQPKLCRLFLQNKHCPYGRTCRYLHSAATALPPPPSTFPIPNPQSQPEVGQLDRSSSAEYKRMQTYAAVPSDSYPYAENSTMHTAIAATANASTSTLAAGSSHNNEPYAVKFVFKKNELKKINRIYADWISDFSR* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1809 203 SUPERFAMILY CCCH zinc finger 70 95 IPR036855 GO:0046872
Pvu5g1809 203 SMART c3hfinal6 38 64 IPR000571 GO:0046872
Pvu5g1809 203 SMART c3hfinal6 68 95 IPR000571 GO:0046872
Pvu5g1809 203 SUPERFAMILY CCCH zinc finger 37 69 IPR036855 GO:0046872
Pvu5g1809 203 MobiDBLite consensus disorder prediction 1 36 - -
Pvu5g1809 203 Gene3D - 30 70 - -
Pvu5g1809 203 Gene3D - 71 97 - -
Pvu5g1809 203 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE FAMILY PROTEIN 22 197 - -
Pvu5g1809 203 ProSiteProfiles Zinc finger C3H1-type profile. 68 96 IPR000571 GO:0046872
Pvu5g1809 203 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 72 94 IPR000571 GO:0046872
Pvu5g1809 203 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 40 63 IPR000571 GO:0046872
Pvu5g1809 203 PANTHER CCCH ZINC FINGER/TIS11-RELATED 22 197 IPR045877 GO:0003729
Pvu5g1809 203 ProSiteProfiles Zinc finger C3H1-type profile. 38 65 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1809 38 96 C3H Transcription Factor Family AT1G68200 40.299 9.52e-10 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu5g1809 zf-CCCH 8.6e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1809 - - vun:114185879 263.848