Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1789 ATGAGTGGGAAGAGTTGGTTGAGTGGCATGCAAGACCACCTTAAATTGGCTAGAGAATACGCGGCGGAAGGAGTCTACTACACCTCCGTCATCTTCTTCGACGGCGCCGTTGCCCAAATCAGTAACCACCTCAACTCCGTCGACGACCCTTTGGTGAGAGCCAAATGGATGAACGTTAAGAAAGCGGTGTGCGATGAAACCCAAGTGGTGAAACAACTAGACGCGGAGAGAAGGGCGTTTAAGGAAACTCGATCACGATCACCGTCTGAGGAGTATCCCATTCCCAGTACCTCTCCTTGCGACCCCGACGTCTGGAGCCCGCCAAGTGGAGAGCCCAGGCCCACTGCTCGAAAGGACGGGGCTTGGTGTCGAGGCTCTACCAGGCCCGCCACTCGTGCCGTAAAGCCCAGCAGGGTTAGCTCTGGGCCCCGACCACCGACGAATGGAAAAAACGGCGGTGGTGGTGCTTCTGGAAAGGGGACCAGGACAGGTGGTTGTTCACGTTCAGTTAATGGAGATGGGAAGAAGTCAAAGAAGTATGAGTATGAAGGTCCTGATCCTGAGATGGCGGAAATGTTGGAAAGGGATGTGTTAGAAAGGTGTCCTGGTGTGAGATGGGATGATGTTGCAGGGCTCACTCAAGCAAAAAGCCTTCTAGAAGAAGCCCTTCTTCTTCCCTTGTGGATGCCTCAATATTTCCAGGGAATAAGGAGACCATGGAAAGGTGTTCTCATGTTTGGGCCTCCAGGAACTGGGAAAACGCTTCTTGCTAAAGCAGTTGCTACTGAATGTGGCACCACTTTCTTCAACGTTTCTTCTGCAACTTTGGCTTCTAAATGGCGTGGAGAGAGCGAGCGCATGGTTCGATGCTTGTTTGATCTTGCAAGAGCACATGCACCCAGTGCCATTTTCATTGATGAGATTGATTCTCTATGCAATGCTAGGGGGGCTTCTGGGGAGCACGAATCATCCAGAAGGGTGAAGTCCGAACTTCTAGTTCAGGTTGATGGTGTGAACAATAGTTCCACAAATGAAGATGGAACCGTAAGATACAGGAGAAGGCTGGAAAAACGTATATACATTCCTCTTCCAAATTTGGAGACTCGTAAAGAGCTGATCCGTATCAATCTGAGGACTGTGTCCCCTGATGTGAACATAGATGAAGTGGCCAAAGGGACAGAAGGGTACAGTGGAGATGACTTGACAAATGTGTGCCGTGATGCTTCTCTGAATGGTATGAGACGCAAAATAGCAGGAAAGACGCGTGATGAGATCAAGAAGATGTCCAAAGATGAGATTTCCAAGGACCCTGTTGCAATGTGTGATTTTAAAGAAGCTTTGAAGAAAGTCCAACCAAGTGTTTCTCAGGCTGACATTGAACGCCATCAAAAGTGGTTTGCTGAATTTGGATCAGCCTAA 1419 0.4926 MSGKSWLSGMQDHLKLAREYAAEGVYYTSVIFFDGAVAQISNHLNSVDDPLVRAKWMNVKKAVCDETQVVKQLDAERRAFKETRSRSPSEEYPIPSTSPCDPDVWSPPSGEPRPTARKDGAWCRGSTRPATRAVKPSRVSSGPRPPTNGKNGGGGASGKGTRTGGCSRSVNGDGKKSKKYEYEGPDPEMAEMLERDVLERCPGVRWDDVAGLTQAKSLLEEALLLPLWMPQYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAHAPSAIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNSSTNEDGTVRYRRRLEKRIYIPLPNLETRKELIRINLRTVSPDVNIDEVAKGTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKKMSKDEISKDPVAMCDFKEALKKVQPSVSQADIERHQKWFAEFGSA* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1789 472 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 8 472 IPR028596 GO:0008017|GO:0008568|GO:0051013
Pvu5g1789 472 CDD AAA 237 363 - -
Pvu5g1789 472 Pfam ATPase family associated with various cellular activities (AAA) 243 341 IPR003959 GO:0005524|GO:0016887
Pvu5g1789 472 PANTHER AAA DOMAIN-CONTAINING 5 85 - -
Pvu5g1789 472 PANTHER AAA DOMAIN-CONTAINING 113 472 - -
Pvu5g1789 472 Gene3D - 202 462 IPR027417 -
Pvu5g1789 472 MobiDBLite consensus disorder prediction 80 185 - -
Pvu5g1789 472 Gene3D - 5 81 - -
Pvu5g1789 472 Gene3D - 364 448 - -
Pvu5g1789 472 Pfam Vps4 C terminal oligomerisation domain 425 470 IPR015415 -
Pvu5g1789 472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 459 IPR027417 -
Pvu5g1789 472 SMART AAA_5 239 365 IPR003593 -
Pvu5g1789 472 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 113 472 - -
Pvu5g1789 472 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 5 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1789 Pvu-Chr5 39657672 39660082 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1789 195 453 Calmodulin-binding Proteins AT3G56690 36.496 7.15e-45 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1789 K07767 - gmx:100801219 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1789 5 39657672 39660082 Pvu10g1578 10 42172730 42177192 PCT