Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1785 ATGTGGTCGCAGTCACAGAGTAGCATCCACTCATCGGAATCTGACGCCGCTGATTGTAACTTGAAGGAGACGGAGCTCACGCTTGGTCTTCCCGGTACCAAAACCGCCGCCAAACGTTACTTCTCCGACACCGTTGAAGATCTTGCAACCTCTTTAGATAAATCCAAATTCCCGACATACAAGGAACAGGTGGTGGGGTGGCCGCCGGTGAGGGCGAGCAGGAAGAATGCGCTGAAGAGTTGGAAGTTGGTGAAGGTGGCTGTGGATGGAGCTCCATATCTGAGAAAAGTGGATCTTGAAATGTACGAGAGTTATGAAGATTTGATGAGGGAATTAGAGAGCATGTTTTGTGGTTTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTCATGGAGTCTGTAAATGGGATTGAATACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTCGGGGATGTACCATGGAAGATGTTTGTTGAATCATGCAAGAGGATAAGACTTGTGATTAGCTCAGAGGCTATTGTTCTAGGTCCGAGATCTAGTTCAAAATGTTCGGGTTCCACCTAG 579 0.4698 MWSQSQSSIHSSESDAADCNLKETELTLGLPGTKTAAKRYFSDTVEDLATSLDKSKFPTYKEQVVGWPPVRASRKNALKSWKLVKVAVDGAPYLRKVDLEMYESYEDLMRELESMFCGLAIRNHLMNERKLMESVNGIEYMPTYEDKDGDWMLVGDVPWKMFVESCKRIRLVISSEAIVLGPRSSSKCSGST* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1785 192 Pfam AUX/IAA family 81 183 IPR033389 -
Pvu5g1785 192 Pfam AUX/IAA family 34 79 IPR033389 -
Pvu5g1785 192 PANTHER AUXIN-RESPONSIVE PROTEIN IAA15 8 178 - -
Pvu5g1785 192 ProSiteProfiles PB1 domain profile. 81 185 IPR000270 GO:0005515
Pvu5g1785 192 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 178 IPR003311 GO:0005634|GO:0006355
Pvu5g1785 192 Gene3D - 76 186 - -
Pvu5g1785 192 SUPERFAMILY CAD & PB1 domains 74 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1785 Pvu-Chr5 39635540 39637426 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1785 84 184 B3 DNA Binding Superfamily AT1G59750 32.673 4.46e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pvu5g1785 AUX_IAA 3.8e-44 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1785 K14484 - gmx:100500488 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1785 5 39635540 39637426 Pvu5g1785 5 39635540 39637426 ECH