Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1784 ATGGAGAAAGAAGATCTTGGTCTTGAGATCACCGAGCTCAGGCTGGGGCTTCCCGGCGGGGAAAAGACGGAGAAGGAGACGAAGAAGAAGAGGGTCTTCTCCGACATTGTAGGGGAGAACAGCTCCTCTGAAGAAGATCGTAAAAAGGAAACCAAGAATCAAGTTGTGGGGTGGCCTCCGGTGTGCTCCTACCGGAAGAAGAACAGCGTCAATGAAGCTAAAATGTACGTGAAAGTCAGCATGGACGGTGCTCCTTTCTTGCGTAAAATCGATCTAGCTATGCACAAGGGATACTCCGACTTCGCCTTTGCCTTGGACAACTTCTTCGGTTGCTATGGAATCGGCGAAGCGTTGAAGGATGCGGAGAATGCTGAACACGTTCCCATATACGAGGACAAAGATGGTGACTGGATGCTGGTTGGCGATGTTCCCTGGGAGATGTTTACTGAGTCATGCAAGAGATTGAGGATTATGAAGAGATCAGATGCAAAGGGGTTCGATCTGCAACCAAAAGGGTCTTTAAAGGGATTCATAGAAGGCGTGGAAAAATGA 552 0.4873 MEKEDLGLEITELRLGLPGGEKTEKETKKKRVFSDIVGENSSSEEDRKKETKNQVVGWPPVCSYRKKNSVNEAKMYVKVSMDGAPFLRKIDLAMHKGYSDFAFALDNFFGCYGIGEALKDAENAEHVPIYEDKDGDWMLVGDVPWEMFTESCKRLRIMKRSDAKGFDLQPKGSLKGFIEGVEK* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1784 183 MobiDBLite consensus disorder prediction 17 52 - -
Pvu5g1784 183 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 166 IPR003311 GO:0005634|GO:0006355
Pvu5g1784 183 Pfam AUX/IAA family 40 166 IPR033389 -
Pvu5g1784 183 Gene3D - 68 171 - -
Pvu5g1784 183 MobiDBLite consensus disorder prediction 18 52 - -
Pvu5g1784 183 SUPERFAMILY CAD & PB1 domains 68 159 - -
Pvu5g1784 183 ProSiteProfiles PB1 domain profile. 74 162 IPR000270 GO:0005515
Pvu5g1784 183 PANTHER AUXIN-RESPONSIVE PROTEIN IAA6 4 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1784 Pvu-Chr5 39626314 39629755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1784 34 182 B3 DNA Binding Superfamily AT4G23980 30.201 6.05e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pvu5g1784 AUX_IAA 3.1e-43 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1784 K14484 - gmx:100811879 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1784 5 39626314 39629755 Pvu5g1784 5 39626314 39629755 ECH
Pvu10g1575 10 42144076 42147007 Pvu5g1784 5 39626314 39629755 PCT