Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1783 ATGGATGTTACTTCTCTGGATTCAAATAGCAATACCCAAACCGACCAACACCCTTTGCTGATGGAGCAACTGGAAAATCGAAATGGTCGTCAGCATGTAATTGACATTACTGTGAATGGTGAAGCTCTAACCATGTCTTCTCATAATGATCAACACTCTGAAATGCATTTACCGCAGAATGGAGATCAACCATCTGGGGACACACAAGATTCCACTCATCAAGCATCTTCATCTTCTGCGTCAAGATTAAACTCTAGAAATTCAGCTTCATTAAGAAGAGGTGAAGGATATGGTCAGCGTGGACGGAGTCCATTGAATTCTGGACTGTGGATTTCTGTTGAGCTTTTTGTCACTGTGAGTCAGATCATAGCATCTATAGTGGTTCTGTCACTGTCCAGGAATGAAAATCCTCAAGCTCCATTATTTGCATGGGTTGTGGGTTATGCATCTGGTTGTGTTGCCACACTTCCCATTCTATATTGGCGTTTTCGAAACCGTAATCAAAGCAATGAACAAGATTCCTCTCAACAGTCTCAAGGATCTTCTGGAAGCAATCCTCCAGATCGTACCTATACTGCCATCTATGTTTCTCATGTCTCAGACGAGGAGAACAGTCATGCTACACAATCAGCCACAAGAAACACTATAATTCCTGGAGCCTTTACTTCTAGGCTTAATGGATTAGTAGACCATTTCAAGATGGCCTTGGATTGCTTCTTTGCAGTTTGGTTTGTAGTTGGAAATGTTTGGATCTTTGGGGGTCACACTTCTCCTTCTGATGCTCCACAATTGTATAGGTTATGTATTGTGTTTCTTACTTTTAGCTGTATCGGATATGCAATGCCATTTATACTTTGTGCAACTATTTGTTGCTGCCTACCTTGTATAATTTCTGTTTTGGGCATTCGGGAGGATTTTTCTCAAAATAGAGGAGCAACAGTAGAATCAATTAATGCTCTACCAATCTTCAAGTTCAAATTGAAGAACAATGAAAACTGTGGTGATCAGGATGTCAATGCAGCTATAGATGAAGGTGGAGTTTTGGCTGCAGGAACAGAAAAAGAGCGAGTTATTTCAGGAGAAGACGCTGTTTGTTGCATTTGCTTAGCAAAATACGCAGATGATGATGAGCTTAGAGAGTTACCTTGCTCTCACGTTTTTCATGTAGTGTGTGTAGACAAATGGTTAAAGATAAATGCATCATGCCCTCTTTGTAAAACTGAAGTTGGTACAGGTAATGGAGAGTCACCTTCACCCTGGGATTCCAGTACTCATTAG 1278 0.4085 MDVTSLDSNSNTQTDQHPLLMEQLENRNGRQHVIDITVNGEALTMSSHNDQHSEMHLPQNGDQPSGDTQDSTHQASSSSASRLNSRNSASLRRGEGYGQRGRSPLNSGLWISVELFVTVSQIIASIVVLSLSRNENPQAPLFAWVVGYASGCVATLPILYWRFRNRNQSNEQDSSQQSQGSSGSNPPDRTYTAIYVSHVSDEENSHATQSATRNTIIPGAFTSRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHTSPSDAPQLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQNRGATVESINALPIFKFKLKNNENCGDQDVNAAIDEGGVLAAGTEKERVISGEDAVCCICLAKYADDDELRELPCSHVFHVVCVDKWLKINASCPLCKTEVGTGNGESPSPWDSSTH* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1783 425 MobiDBLite consensus disorder prediction 50 103 - -
Pvu5g1783 425 CDD RING-H2_RNF111_like 364 406 - -
Pvu5g1783 425 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 419 - -
Pvu5g1783 425 SMART ringv_2 364 406 IPR011016 GO:0008270
Pvu5g1783 425 MobiDBLite consensus disorder prediction 169 188 - -
Pvu5g1783 425 MobiDBLite consensus disorder prediction 50 92 - -
Pvu5g1783 425 PANTHER PROTEIN, PUTATIVE-RELATED 1 419 - -
Pvu5g1783 425 SUPERFAMILY RING/U-box 357 412 - -
Pvu5g1783 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 413 IPR013083 -
Pvu5g1783 425 Pfam Ring finger domain 365 406 IPR001841 -
Pvu5g1783 425 ProSiteProfiles Zinc finger RING-type profile. 365 406 IPR001841 -
Pvu5g1783 425 SMART ring_2 365 405 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1783 Pvu-Chr5 39609262 39613766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1783 1 416 C3H Transcription Factor Family AT1G80400 58.057 1.28e-171 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1783 - - gmx:100819729 735.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1783 5 39609262 39613766 Pvu5g1783 5 39609262 39613766 ECH