Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1760 ATGACCGATACACCCTGTCACCAAACTCCTCCCACTAGCCCCTGCAACTCCTCCTCTTCAAAACCCCATAAAACAGAGACCCCGAAACAGAGCAAGCCCAAGAGAAACAGAGACCCCACCAGACACCCCCTCTACCACGGCGTGCGAATGCGCAACTGGGGCAAATGGGTATCCGAAATTCGCGAGCCACGCAAGAAATCACGCATATGGCTCGGAACTTTCGCCACGCCAGAAATGGCGGCGCGCGCGCACGACGTTGCGGCTCTGAGCATTAAGGGCCGCGCCGCCATTCTCAACTTCCCTACCATAGTAAACCTGCTTCCCAGACCCGTGACGTGTGCCCCACGTGACATCCAAGTGGCCGCCGCGGAAGCCGCCGCGATGGTGGAGTTCGACCGCGAGTGCTCGGATGAGGCAGAGTCGTCGGATTTGAGCGAGATAGTGGAACTGCCGAACATAGAAGAGAGCTTGGAATCGGTGGAGTCGAGAAGTGAGTTTGCTTTTATTGACTCGGTGGATAGTTGGTTGTACCCTCCAATGGCAGTGGGAAGCATTTGCGAGATGATGGTTGGTGAAGATGAGTGTGGATTCTTCCACTTTCAGACTGATCATCAAAAAACATGCTCTGTTTAG 633 0.5482 MTDTPCHQTPPTSPCNSSSSKPHKTETPKQSKPKRNRDPTRHPLYHGVRMRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGRAAILNFPTIVNLLPRPVTCAPRDIQVAAAEAAAMVEFDRECSDEAESSDLSEIVELPNIEESLESVESRSEFAFIDSVDSWLYPPMAVGSICEMMVGEDECGFFHFQTDHQKTCSV* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1760 210 MobiDBLite consensus disorder prediction 1 24 - -
Pvu5g1760 210 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 12 209 - -
Pvu5g1760 210 Gene3D AP2/ERF domain 44 103 IPR036955 GO:0003700|GO:0006355
Pvu5g1760 210 Pfam AP2 domain 43 93 IPR001471 GO:0003700|GO:0006355
Pvu5g1760 210 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Pvu5g1760 210 MobiDBLite consensus disorder prediction 25 45 - -
Pvu5g1760 210 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Pvu5g1760 210 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Pvu5g1760 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 209 - -
Pvu5g1760 210 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Pvu5g1760 210 SUPERFAMILY DNA-binding domain 44 102 IPR016177 GO:0003677
Pvu5g1760 210 CDD AP2 43 101 IPR001471 GO:0003700|GO:0006355
Pvu5g1760 210 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1760 Pvu-Chr5 39420680 39421777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1760 11 179 AP2-EREBP Transcription Factor Family AT5G11590 52.261 1.13e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu5g1760 AP2 3.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1760 K09286 - gmx:100784419 328.561