Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1749 ATGTCTAGAGCATTGGAACAGGATTACATAGGCTTGGCAGAGAAACCGTCAATGGACGGAGCTTCTGACAAACTATCTTCTTCTTCTTCTTCATCATCATCATCTTCTGTGGATGCTAAAACCTCATCACTCAACTTGAAGGAGACAGAGCTGAGGCTTGGTCTCCCTGGTTGCAAGTCCCCAGAGAGAAAATCTGGTGCTGGACTCTGTCTTTTTGGAACAGAGTTGCAGAACAAGCATAATGTTTGTTCAGTTGCGAGCCCTTTGAAGGCTGGGGCTAAGAGGGGCTTCTCTGACGCTATTGACACTTCTTCTGGGAAAAGGGGTTCTTCTGTCACTGATGGATCTCAAGGAGCTGCTTTGTTCTCTCCCAGAGGGGGCATTGTTGGGAAGCTTCTTATTGGTTTAGACACTCAAACTAATAACACCTCCATCAAAGAGGTTGGTGCAGTTCCTCAATCTGACAAACCGGTTCAGGAAAATAATGACCAGGTTGCTGCAACAAATGCTCATGCCAGTGCTCCTGATGCCAAGGCACAAGTTGTGGGGTGGCCCCCAATTCGATCTTTCCGAAAGAACACGATGGCATCTAATTTGGCAAAAAACAATGATGAAGGCGAGGGAAAACCTGGTTTTGGTTGTCTCTATGTAAAAGTCAGTATGGATGGTGCCCCTTATCTTAGAAAGATTGATCTCAAAACCTATAACAACTACATGGAACTTTCTTCAGCTCTTGAGAAGATGTTCAGCTGCTTTACCATAGGTCAATGCAATTCTCCTGGACTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTTTGAGGGATCTTCTTCATGGATCTGAATATGTTCTTACATATGAAGATAAAGATGGAGACTGGATGCTTGTGGGTGATGTTCCTTGGGAGATGTTCACTGATTCATGTCGGAGACTAAGGATCATGAAAGGCTCTGAGGCAATTGGGCTAGCTCCAAGGACCATGGAGAAATCTAGAAGCCAAAACTAA 1005 0.4488 MSRALEQDYIGLAEKPSMDGASDKLSSSSSSSSSSSVDAKTSSLNLKETELRLGLPGCKSPERKSGAGLCLFGTELQNKHNVCSVASPLKAGAKRGFSDAIDTSSGKRGSSVTDGSQGAALFSPRGGIVGKLLIGLDTQTNNTSIKEVGAVPQSDKPVQENNDQVAATNAHASAPDAKAQVVGWPPIRSFRKNTMASNLAKNNDEGEGKPGFGCLYVKVSMDGAPYLRKIDLKTYNNYMELSSALEKMFSCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLAPRTMEKSRSQN* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1749 334 Gene3D - 211 327 - -
Pvu5g1749 334 SUPERFAMILY CAD & PB1 domains 214 315 - -
Pvu5g1749 334 MobiDBLite consensus disorder prediction 1 43 - -
Pvu5g1749 334 MobiDBLite consensus disorder prediction 21 43 - -
Pvu5g1749 334 Pfam AUX/IAA family 48 325 IPR033389 -
Pvu5g1749 334 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 17 326 IPR003311 GO:0005634|GO:0006355
Pvu5g1749 334 PANTHER AUXIN-RESPONSIVE PROTEIN 17 326 - -
Pvu5g1749 334 ProSiteProfiles PB1 domain profile. 214 316 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1749 Pvu-Chr5 39372909 39375637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1749 216 328 B3 DNA Binding Superfamily AT1G19850 33.043 5.41e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pvu5g1749 AUX_IAA 3e-91 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1749 K14484 - gmx:100804423 550.821