Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1748 ATGATGACTGGGTTTCCTAACTTGTGGAGCATGCATCCACCACCCCAATATGTGCTTCCACCTTCTTCTATTTCTTTTAATTTTTTGTCTGAAAATCCAGAGCCTCCTCAGTCATGGAGCCAACTACTTTCTAGTGGATTACCAGGAGAAGAAGAGAATCTTGGTTTCATAGATTTTCAGCCGAAAAAGTTGGGAAACTTGGATGTTCAAATTCTTAACACTGCTTCTGGAGTTTCTAATAGTTTTGATGCATTAAAGCAAGAAAATTGTGAAAGGGGCAATTTGTACGAACATGGGCGTGAAGAATTTCAGGCTTCTGATCCAGCTGACTCATCTTGGTCACATATGGTGCCTGTTTCTTCTCCCGGCTCTTCTTGTGTTTCTAGCATCAGTGGTAATAATATATTGGATTTCACTTATAACAACGCAGAACATAGAAAAAATCTTTTACAAGACCAAACATCCGAGTGCAATAGCACAGGCAGAGTTGGAGTTTGCAAGAAAGCTAGGGTTCAGTCATGTTCAAGTCAAGCACCTCTGAAGGTGCGGAAGGAGAAGCTAAGTGATAGAATAACAACCCTTCACCAACTAGTTTCCCCGTTTGGAAAGACTGACACAGCTTCTGTGTTGTTAGAAGGCATTGGATATATAAGGTTCCTGCAGGGTCAAATTGAGGCACTGAGCTCTCCTTACGTGGACGATGCATCAAAAAACATGAGGAATCAACAGTCTCTGTTGAATGCCAACAATGGACTGAAAAGAAAAGGAGCTCCAAACCAGGATGCAGAAGATAAAGCAAAGGACTTGAAGAGTAGAGGGTTGTGCTTGGTTCCGGTGTCTTGTACCCAACATGTTGTGAGCCTAAGTGAGTGGAGCACCGCCATATACGGCGGAGGATTTTAA 903 0.4252 MMTGFPNLWSMHPPPQYVLPPSSISFNFLSENPEPPQSWSQLLSSGLPGEEENLGFIDFQPKKLGNLDVQILNTASGVSNSFDALKQENCERGNLYEHGREEFQASDPADSSWSHMVPVSSPGSSCVSSISGNNILDFTYNNAEHRKNLLQDQTSECNSTGRVGVCKKARVQSCSSQAPLKVRKEKLSDRITTLHQLVSPFGKTDTASVLLEGIGYIRFLQGQIEALSSPYVDDASKNMRNQQSLLNANNGLKRKGAPNQDAEDKAKDLKSRGLCLVPVSCTQHVVSLSEWSTAIYGGGF* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1748 300 PANTHER OS05G0228400 PROTEIN 22 288 - -
Pvu5g1748 300 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 231 IPR036638 GO:0046983
Pvu5g1748 300 Gene3D - 181 248 IPR036638 GO:0046983
Pvu5g1748 300 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 171 220 IPR011598 GO:0046983
Pvu5g1748 300 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 22 288 - -
Pvu5g1748 300 CDD bHLH_AtbHLH_like 181 228 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1748 Pvu-Chr5 39345259 39348784 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1748 167 284 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 56.780 4.68e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1748 - - vun:114183597 434.491