Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1742 ATGGGCGCTGACATGTCCAACAATCCACCTCCCTCTTCTCATGCCAAGGACTTCTTTGCCTCCCCAGCTCTCTCTCTCAGCCTTGCTGGGATTTTTCACCGCGCTGGCGTGGCGGCGGAGGCCGAAGCTGCCACTTCCAACATGGAGGTGGAGGAGTGGGAAGAAGGGAGCGGAGGAGGTGAAAGGCTAGAAGAGATTAGCAGCGAGAATTCGGGTCCCACGAGATCCAGATCAGAGGATGATTTTGAAGGAGAAGGTGAGCACGAGGATGGTGATGCTGATGCTGACGTCGACAGGAAGAGGAAGAAGAAGAGGAAGAAATATCACAGACACACTGCTGATCAGATCAGAGAAATGGAAGCGCTTTTTAAAGAGTCACCACATCCTGATGAAAAGCAGAGGCAACAACTAAGCAAGCAATTAGGCCTTGCCCCAAGGCAAGTAAAGTTTTGGTTCCAAAATCGTAGAACCCAAATCAAGGCAATACAAGAGCGTCATGAAAATTCTTTGTTGAAGTCAGAAATAGAGAAACTGAAGGAGAAAAATAAGACCTTACGAGAGACAGTAAACAAAGCTTGTTGCCCCACCTGTGGCGTGCCCACCACAAGCAGAGATGGTGCCATGCCAACCGAAGAACAACAACTACGTATTGAAAATGCCAAACTCAAAGCTGAGGTAGAGAAGCTCAGAGCAGCTTTAGGGAAATACGCACCTGGGTCAACGTCCCCTTCGTGTTCTTCTGGCCATGACCAAGAGAACAGAAGCTCTTTGGATTTTTACACTGGAATTTTCGGAATTGACAATTCAAGGATAATGGATATAGTGAACCAAGCAATGGAGGAACTGATTAAGATGGCTACCATGGGGGAACCATTATGGCTTCGTAGCTTCGAGACTGGTCGCGAAATACTTAACTACGACGAATACGTTAAGGAGTTTGCAGTTGAAAACTCATGCAGTGGAAAGCCAAAGAGATCCATTGAAGCCTCAAGAGACACTGGAGTTGTTTTCGTGGATCTCCCTCGACTTGTCCAAAGTTTTCTAGATGCGAATCAATGGAAAGAAATGTTTCCGTGTTTGATATCTAAGGCGGCAACTGTTGATGTTATATGCAATGGAGAAGGTTCTAACAGGAATGGTGCAGTGCAACTGATGTTTGCTGAGCTCCAAATGCTCACTCCAATGGTGCCCACAAGAGAAGTCTATTTTGTCCGTTTCTGCAAACAGTTGAGTGCTGAACAGTGGGCAATCGTCGATGTATCCATAGACAAAGTAGAAGACAACATTGACGCATCCCTCGTGAAATGCAGAAAACGCCCATCTGGCTGCATTATTGAGGACAAGTCCAATGGCCACTGCAAAGTAATATGGGTGGAGCACTTGGAATGCCAGAAGAGTGCAGTTCACTCTATGTATCGCACCATTGTGAACAGTGGCCTAGCCTTTGGAGCAAAGCACTGGATTACGACTCTGCAACTTCAATGTGAGCGTCTAGTTTTTTTCATGGCAACTAATGTTCCCATGAAGGATTCAACCGGTGTTGCCACATTGGCTGGGAGAAAAAGCATTTTGAAGTTGGCACAAAGAATGACATGGAGCTTCTGCCATGCAATTGGCGCGTCAAGCTTCCACACATGGACTAAGGTTACAAGCAAAAACGGGGAAGACATAAGGATAAGTTCTAGAAAGAATTTGAACGATCCTGGTGAACCTCTTGGATTGATACTGTGCGCTGTTTCATCTGTATGGCTGCCAGTCTCACAAAATGTTCTGTTTGATTTCTTGAGGGATGAAACACGCCGAAGTGAGTGGGATATCATGTCAAGTGGTGGGACAGTGCAGTCCATTGCAAATTTATCCAAAGGACAAGACCGAGGCAATGCCGTTACCATTCAAACAATTAAATTGAAAGAAAAAAGTGTGTGGATACTACAAGATAGCTGCACAAATCCTTATGAGTCAATGGTGGTATATGCTTCTGTGGACATTACTGGTATTCAGTCCGTGATGACAGGATGTGATTCAAGCAACCTTGCCATACTTCCTTCGGGATTCTCAATTATTCCCGATGGCCTCGAGTCAAGGCCATTGGTGATTACTTCAAGGCAGGAAGAAAAATATACCGAAGGAGGATCTTTGTTTACAATGGCATTCCAGATTCTGACCAATACATCTCCCACAGCCAAGTTAACAGTGGAGTCTGTGGACTCAGTCAACACTATTGTGTCTTGTACATTGAGAAATATCAGAACAAGCTTACAATGTGAAGAGGGTTAG 2277 0.4537 MGADMSNNPPPSSHAKDFFASPALSLSLAGIFHRAGVAAEAEAATSNMEVEEWEEGSGGGERLEEISSENSGPTRSRSEDDFEGEGEHEDGDADADVDRKRKKKRKKYHRHTADQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKSEIEKLKEKNKTLRETVNKACCPTCGVPTTSRDGAMPTEEQQLRIENAKLKAEVEKLRAALGKYAPGSTSPSCSSGHDQENRSSLDFYTGIFGIDNSRIMDIVNQAMEELIKMATMGEPLWLRSFETGREILNYDEYVKEFAVENSCSGKPKRSIEASRDTGVVFVDLPRLVQSFLDANQWKEMFPCLISKAATVDVICNGEGSNRNGAVQLMFAELQMLTPMVPTREVYFVRFCKQLSAEQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSAVHSMYRTIVNSGLAFGAKHWITTLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTWSFCHAIGASSFHTWTKVTSKNGEDIRISSRKNLNDPGEPLGLILCAVSSVWLPVSQNVLFDFLRDETRRSEWDIMSSGGTVQSIANLSKGQDRGNAVTIQTIKLKEKSVWILQDSCTNPYESMVVYASVDITGIQSVMTGCDSSNLAILPSGFSIIPDGLESRPLVITSRQEEKYTEGGSLFTMAFQILTNTSPTAKLTVESVDSVNTIVSCTLRNIRTSLQCEEG* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1742 758 Pfam START domain 275 497 IPR002913 GO:0008289
Pvu5g1742 758 Gene3D - 92 175 - -
Pvu5g1742 758 ProSitePatterns 'Homeobox' domain signature. 137 160 IPR017970 GO:0000981|GO:0006355
Pvu5g1742 758 SMART HOX_1 104 166 IPR001356 GO:0003677
Pvu5g1742 758 SMART START_1 273 497 IPR002913 GO:0008289
Pvu5g1742 758 Pfam Homeodomain 105 160 IPR001356 GO:0003677
Pvu5g1742 758 CDD START_ArGLABRA2_like 269 496 - -
Pvu5g1742 758 ProSiteProfiles 'Homeobox' domain profile. 102 162 IPR001356 GO:0003677
Pvu5g1742 758 SUPERFAMILY Bet v1-like 267 497 - -
Pvu5g1742 758 SUPERFAMILY Bet v1-like 519 719 - -
Pvu5g1742 758 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 18 755 - -
Pvu5g1742 758 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 18 755 IPR042160 -
Pvu5g1742 758 Coils Coil 212 232 - -
Pvu5g1742 758 CDD homeodomain 109 160 IPR001356 GO:0003677
Pvu5g1742 758 Gene3D - 322 494 IPR023393 -
Pvu5g1742 758 ProSiteProfiles START domain profile. 264 500 IPR002913 GO:0008289
Pvu5g1742 758 SUPERFAMILY Homeodomain-like 96 163 IPR009057 -
Pvu5g1742 758 Coils Coil 161 191 - -
Pvu5g1742 758 MobiDBLite consensus disorder prediction 39 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1742 Pvu-Chr5 39292529 39298081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1742 66 757 Homeobox Transcription Factor Family AT1G79840 65.670 0.0 922
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu5g1742 START 2.3e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1742 K09338 - gmx:100808292 1319.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1742 5 39292529 39298081 Pvu5g1742 5 39292529 39298081 ECH