Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1730 ATGAGAAGAAGCGTGTTTCCCTCTCTATTGCTCCTCCTTCTACTTCACCCTTCTGAAGGTGAAGACATTGCCATTTACTGGGGTCAAAACCCCCGAGAGGGAAACCTTACAGAAACATGTGCAACAGGAAAATACTCCTACGTCAACATAGCCTCCCTTTCCACCTTTGGGAATGGCCAAACCCCAAAACTGGCCATTGCGGCTAATCATTGTGACGTAGCATCTTCTAATGTGTGCACTGAAATCGGAAGAGAAATTAGAAATTGTCAAAAGCAAGGGATCAAGGTGATGCTTTCTATTGGAGGAAACAGTGATAAATACTCTATAACTTCCATTGAGGATGCCAAGAATGTTTCCGATTACTTGTGGAACAATTTCCTGGGTGGCTCATCCTCATCACGCCCATTTGGGGATGCAGTCTTAGATGGCATTGACTTTGACATAAGGGCAGCAACTCCTCAGTGTCCATTTCCTGATGCTACGCTGGATTCCGCCCTTGCTACTGGCCTTTTTGACTATGTCTGGATACAATTCTACAACAATCCTTCATGCGAATATACCCAAAACAATTTCGACAACTTCCTTAAAGTATGGAACCGTTGGTCCTCGTCATTGAATGCAGGGAAAATATTTCTGGGGTTACCAGCAGATCAAGCTGCAGTTCCAAGCGGTTATGTTTCAGCTGATGTATTAGTTTCGAAGATCTTGCCTGCAGTAAACGAGTCACCAAATTATGGAGGCGTCATGTTGTGGTCAAGGTACGAGGATAAAATGAGTGGATACAGCTCCTACATTCAAAATTTTCACACAAATCAGACTCTACGCTCTGTGTGCACACCTCAAAGCGTTCCTTCCTGCAGGAGCTCTGAAGGTGATTTCGTGGAAGGTGTTGGTAACATGTCCACCGTTGGCACTGAAGTTTATGCAGGCAGCAATGGCACGCAGTGCTGTGAGATCATATGCAGGAACAATTGTTCCTGTCAAGCCTATGCCCCAATAAACCACAAAAACAATACTGGGTGTCAGATATGGCTCAAAGGAACAGAATTTGTTAGAGCCTCTGTAGACATAGCACTGCCCATCTATGTTTCTGTTGCACTGCTCCCGGATGACAAAAGTACGACCAGATTCCCCACCACAAAAGTAAACCGGTGGTACATATGGCTCATCATTGGGGTGGCAGCAGCATTTGCAATACCTGTAATTTTCTATTTATGGCGTGTCTTGTGGAGAAATTACAAAGCTAAAGTGGAGAGAAAGAAGATGCAGAAGAAGTTATTACATGACATTGGAGGTAATTCCAGAAAAAGTAAGAACAAGGGAAAGACAAGTAATGGGGTTGAAATATTCACCTTTGAAACCATTGTTGCAGCAACAGAGAATTTCTCAGCAGCTAATAAGCTAGGAGAGGGTGGATTCGGTCCTGTTTATAAGGGAACACTAAGTGATCAGCAAGAAGTAGCAATCAAGCGACTTTCTAAGAGTTCAGAACAGGGGGTAATGGAATTTAAGAATGAAGCCAAACTTATGGCCAAACTCCAACACACTCATCTTGTAAAACTTCTAGGATTCTGCATCCAGAGAGATGAAAGAATATTGGTTTATGAATACATGCCTAACAAAAGCTTAGACTTCTACCTATTTGATTCAGCTAGAAAGAACTTGCTAGACTGGGAAAAACGGTTGAACATCATTGGAGGCATTGCTCAAGGACTTCTTTATCTACACAAGTACTCGAGACTAAAGGTGATACATCGAGACCTGAAAGCAGGTAATATATTGCTTGATCACGAGATGAATCCTAAGATATCTGACTTTGGCCTGGCTCGAATATTTGGTGTAAGGGCATCAGAAGAAAACACAAACAGAGTTGTTGGTACATATGGCTACATGGCTCCAGAGTATGCAATAAATGGTGTTGTGTCCATCAAAATAGATGTATTCAGCTTTGGTGTGCTGCTACTAGAAATACTTATTGGCAAGAAAAATAATAGTCTTTATGATTCAGATCGTACACTCAACCTCATAGGATATGTGTGGCAGCTCTGGAATGAAGGCAGAACTCTGGAGTTGATAGACCCAGATTCGCATGAACTATGTCCTCAGAATGCAGTTTTGAGATGTGTTCATATCGGCCTGCTGTGTGTACAAGATCAAGCAACAGATAGACCAACCATGGCAGACATTGTTTCATTTCTATCAAATGACACAGTGGAACTTCCCCAACCAAAACAGCCAGCATTCTTCATCAATGTGGTTGTGGAAGACTCAGAGCTTTCTTACAGCAGACAAGAACTTCATTCCTCAAACGACTTAACACTTTCTAGCACACATGGAAGATAA 2343 0.4242 MRRSVFPSLLLLLLLHPSEGEDIAIYWGQNPREGNLTETCATGKYSYVNIASLSTFGNGQTPKLAIAANHCDVASSNVCTEIGREIRNCQKQGIKVMLSIGGNSDKYSITSIEDAKNVSDYLWNNFLGGSSSSRPFGDAVLDGIDFDIRAATPQCPFPDATLDSALATGLFDYVWIQFYNNPSCEYTQNNFDNFLKVWNRWSSSLNAGKIFLGLPADQAAVPSGYVSADVLVSKILPAVNESPNYGGVMLWSRYEDKMSGYSSYIQNFHTNQTLRSVCTPQSVPSCRSSEGDFVEGVGNMSTVGTEVYAGSNGTQCCEIICRNNCSCQAYAPINHKNNTGCQIWLKGTEFVRASVDIALPIYVSVALLPDDKSTTRFPTTKVNRWYIWLIIGVAAAFAIPVIFYLWRVLWRNYKAKVERKKMQKKLLHDIGGNSRKSKNKGKTSNGVEIFTFETIVAATENFSAANKLGEGGFGPVYKGTLSDQQEVAIKRLSKSSEQGVMEFKNEAKLMAKLQHTHLVKLLGFCIQRDERILVYEYMPNKSLDFYLFDSARKNLLDWEKRLNIIGGIAQGLLYLHKYSRLKVIHRDLKAGNILLDHEMNPKISDFGLARIFGVRASEENTNRVVGTYGYMAPEYAINGVVSIKIDVFSFGVLLLEILIGKKNNSLYDSDRTLNLIGYVWQLWNEGRTLELIDPDSHELCPQNAVLRCVHIGLLCVQDQATDRPTMADIVSFLSNDTVELPQPKQPAFFINVVVEDSELSYSRQELHSSNDLTLSSTHGR* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1730 780 ProSiteProfiles Protein kinase domain profile. 462 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1730 780 Pfam PAN-like domain 307 346 IPR003609 -
Pvu5g1730 780 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 21 272 IPR001223 GO:0005975
Pvu5g1730 780 PANTHER OS01G0783800 PROTEIN 234 749 - -
Pvu5g1730 780 SUPERFAMILY (Trans)glycosidases 18 266 IPR017853 -
Pvu5g1730 780 Gene3D Phosphorylase Kinase; domain 1 435 537 - -
Pvu5g1730 780 Pfam Protein tyrosine and serine/threonine kinase 465 733 IPR001245 GO:0004672|GO:0006468
Pvu5g1730 780 Pfam Glycosyl hydrolases family 18 23 150 IPR001223 GO:0005975
Pvu5g1730 780 SMART serkin_6 462 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1730 780 Gene3D Glycosidases 21 150 - -
Pvu5g1730 780 CDD GH18_hevamine_XipI_class_III 22 267 IPR045321 -
Pvu5g1730 780 Gene3D Glycosidases 151 267 - -
Pvu5g1730 780 SUPERFAMILY Protein kinase-like (PK-like) 445 764 IPR011009 -
Pvu5g1730 780 Gene3D Transferase(Phosphotransferase) domain 1 538 744 - -
Pvu5g1730 780 CDD STKc_IRAK 468 733 - -
Pvu5g1730 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 583 595 IPR008271 GO:0004672|GO:0006468
Pvu5g1730 780 Pfam Domain of unknown function (DUF3403) 735 780 IPR021820 GO:0004674
Pvu5g1730 780 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 234 749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1730 Pvu-Chr5 39230363 39233606 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1730 452 748 Receptor kinase-like Gene Family AT4G23230 60.269 2.57e-125 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pvu5g1730 PK_Tyr_Ser-Thr 2.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1730 - - gmx:100794508 1137.48