Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1717 ATGTTCTCATCAACCAGATGCGCTTTTCTGAACAACGCGGGGTTAGGTGGGTGTGGCAGCATATGTGAGGGGGCGAGGAAGCGTTCAAGTCCTATGACGGTGGTTTGTATGACCCCAAGTAGCAGCAGGTCGGTTGATAGAAACAGCAGCGTTGTGATGGAGACGCCGTTGAAGGAATTGAAAAAGGATTCCGCGGTGGCTGACGTTGATGGTGACTCCGTCTCCGCCGGTGGCCCTCAAGATGTGTACGGCGAGGATAGGGCGACGGAGGACCAGTTTGTTACCCCTTGGAGTGTCTCCGTTGCTAGTGGTTATACATTGTTACGAGATCCCCACTTCAACAAAGGGCTTGCCTTCAGTGAAAAAGAGAGGGATGCTCACTACTTGCGTGGTCTTCTTCCCCCAACAGTTATTCCCCAAGAAACTCAGGTAAAGAAAATGATCCGGCACATACGCCAGTATCAAGTTCCATTGCAGAAGTACATGGCAATGATGGATCTTCAGGAGAGAAACGAAAGGCTATTTTACACACTTCTTATTAATCACGTTGAAGAGTTACTCCCTGTTGTTTATACTCCAACTGTTGGTGAAGCTTGCCAGAAGTATGGGAGCATCTTTATGCGTCCTCAGGGTCTTTATATAAGTTTGAAAGAGAAGGGGAAGATCCGTGAAGTACTAAGGAATTGGCCTGAGAAGAACATTCAAGTCGTAGTTGTAACTGATGGAGAACGGATCCTGGGTCTTGGTGATCTTGGTTGTCAGGGTATGGGAATACCAGTGGGGAAACTTTCTTTATACACAGCACTTGGAGGAGTTCGCCCATCAGCTTGTTTGCCTATTACCATTGATGTGGGTACAAACAATGAGGAGTTGCTGAATGATGAATTGTACATTGGGCTAAAGCAAAGACGTGCAACTGGGCAGGAGTATGCTGAGCTTATGCACGAATTTATGACAGCACTCAAGCAAACTTATGGAGAAAAGGTCCTAATTCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGATCTGCTCGAGAAATATAGGTCAACACATCTGGTCTTTAATGATGATATTCAGGGAACAGCATCCGTTGTCCTTGCTGGATTAGTTGCAGCTCTGAAATTGGTTGGTGGTAATTTGGCTGATCACAGATTCTTGTTCCTTGGTGCTGGAGAGGCTGGCACAGGAATAGCAGAACTCATAGCACTTGAAACATCTAAACAGACAAACTCCCCACTGGAGGAAGTGCGCAAGAATATTTGGTTGGTGGACTCAAAGGGATTGATTGTTAGCTCCCGCAAAGACTCACTCCAACATTTCAAGAAGCCCTGGGCTCATGAGCATGAACCTGTTAGAAATCTTTTAGATGCTGTTAATCAAATTAAGCCGACAGTGTTGATTGGAACATCAGGACAAGGAAGAACTTTTACTAAGGAGGTGATTGAGGCTATGGCCTCCAACAACGAGAAACCTATTATTCTTTCTCTTTCCAACCCCACGTCACAATCAGAATGTACTGCTGAAGAAGCTTACAAGTGGAGCCAGGGTCGTGCCATTTTTGCAAGTGGGAGTCCATTTCCCCCAGTTGAATATGAGGGGAAAGTGTTTGCCCCTGGCCAGGCCAACAATGCATACATTTTTCCTGGATTTGGTCTTGGTTTGATAATGTCTGGGACCATTCGAGTGCATGATGACCTGCTTCTGGCTGCATCTGAGGCTTTGGCTTCACAAGTCAGCCAAGAGAACTATGACAAGGGACTCATATACCCACCATTCACCAACATCAGAAAGATTTCTGCACACATAGCTGCCAAAGTTGCTGCTAAGGCTTATGAGCTTGGTTTGGCCACTAGGCTTCCTCAACCAAAAGATTTGGTGAAGTTTGCAGAGAGCTGTATGTACACCCCATCCTACAGAAGCTACCGGTGA 1932 0.4607 MFSSTRCAFLNNAGLGGCGSICEGARKRSSPMTVVCMTPSSSRSVDRNSSVVMETPLKELKKDSAVADVDGDSVSAGGPQDVYGEDRATEDQFVTPWSVSVASGYTLLRDPHFNKGLAFSEKERDAHYLRGLLPPTVIPQETQVKKMIRHIRQYQVPLQKYMAMMDLQERNERLFYTLLINHVEELLPVVYTPTVGEACQKYGSIFMRPQGLYISLKEKGKIREVLRNWPEKNIQVVVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEELLNDELYIGLKQRRATGQEYAELMHEFMTALKQTYGEKVLIQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGLVAALKLVGGNLADHRFLFLGAGEAGTGIAELIALETSKQTNSPLEEVRKNIWLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVRNLLDAVNQIKPTVLIGTSGQGRTFTKEVIEAMASNNEKPIILSLSNPTSQSECTAEEAYKWSQGRAIFASGSPFPPVEYEGKVFAPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALASQVSQENYDKGLIYPPFTNIRKISAHIAAKVAAKAYELGLATRLPQPKDLVKFAESCMYTPSYRSYR* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1717 643 PIRSF ME 61 643 IPR001891 GO:0004470|GO:0004471
Pvu5g1717 643 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 82 358 IPR046346 -
Pvu5g1717 643 ProSitePatterns Malic enzymes signature. 355 371 IPR015884 GO:0004471
Pvu5g1717 643 PANTHER MALIC ENZYME-RELATED 74 643 - -
Pvu5g1717 643 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Pvu5g1717 643 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 359 642 IPR036291 -
Pvu5g1717 643 Pfam Malic enzyme, N-terminal domain 168 349 IPR012301 GO:0004471
Pvu5g1717 643 Gene3D - 357 643 - -
Pvu5g1717 643 PANTHER NADP-DEPENDENT MALIC ENZYME 4, CHLOROPLASTIC 74 643 - -
Pvu5g1717 643 Gene3D - 102 356 IPR037062 GO:0004471
Pvu5g1717 643 CDD NAD_bind_1_malic_enz 359 637 - -
Pvu5g1717 643 PRINTS Malic enzyme signature 174 198 IPR001891 GO:0004470|GO:0004471
Pvu5g1717 643 PRINTS Malic enzyme signature 234 263 IPR001891 GO:0004470|GO:0004471
Pvu5g1717 643 PRINTS Malic enzyme signature 270 292 IPR001891 GO:0004470|GO:0004471
Pvu5g1717 643 PRINTS Malic enzyme signature 330 348 IPR001891 GO:0004470|GO:0004471
Pvu5g1717 643 PRINTS Malic enzyme signature 355 371 IPR001891 GO:0004470|GO:0004471
Pvu5g1717 643 PRINTS Malic enzyme signature 386 402 IPR001891 GO:0004470|GO:0004471
Pvu5g1717 643 PRINTS Malic enzyme signature 489 505 IPR001891 GO:0004470|GO:0004471
Pvu5g1717 643 SMART malic_2 168 349 IPR012301 GO:0004471
Pvu5g1717 643 SMART Malic_M_2 359 612 IPR012302 GO:0051287
Pvu5g1717 643 Pfam Malic enzyme, NAD binding domain 359 611 IPR012302 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1717 Pvu-Chr5 39126159 39131844 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1717 K00029 - gmx:100791514 1147.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1512 10 41665877 41671047 Pvu5g1717 5 39126159 39131844 ECH
Pvu2g3184 2 47120072 47126513 Pvu5g1717 5 39126159 39131844 ECH
Pvu9g1143 9 16740222 16745122 Pvu5g1717 5 39126159 39131844 ECH
Pvu5g1717 5 39126159 39131844 Pvu5g1717 5 39126159 39131844 ECH
Pvu5g1717 5 39126159 39131844 Pvu9g1143 9 16740222 16745122 ECH
Pvu5g1717 5 39126159 39131844 Pvu10g1512 10 41665877 41671047 PCT