Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1716 ATGACTCGGCGGTGCTCCCACTGCAGCAACAACGGCCACAACTCCCGGACCTGCCCCTCCTCGCGGGGGGCGGCCGCCGGCGTCAAGCTCTTCGGGGTCAGGCTCACCGATGGATCAATCATAAAGAAGAGCGCCAGTATGGGAAACCTTAACCTCGCCTCCTCCGCACACCACCATTCTTCTCCTTCTTCTTCCAACCTCGCCGCCTCCTCTCCCAATCCAACCTCTCCCTGCTCCGACCTGCTCCATGAGCCTCACGGTTACTTGTCCGACGACCCCGCCCATATCTCCACCCTGGCTAACCGCCGCGGAGAAAGAAAAAAAGGTGTTGCATGGACTGAAGAAGAACATAGGCTGTTCTTAATTGGTCTCCAGAAGCTGGGCAAAGGAGACTGGCGTGGGATAGCACGTAATTTTGTTGTATCAAGGACCCCAACCCAAGTAGCAAGTCATGCCCAGAAGTATTTTATCCGGCAAAGTCATGCTACCAGGAGAAAGAGACGTTCCAGCCTTTTTGACATGGTTCCAGATATGACTTCAGATCCACCTTCAGTGCCAGAAGAACAAGTGCTGCTTCCACCTTCTGAGAAGCCGCAACCTTGTAATGGAAAACTACAGCCTTCACTAAATCTCTCCCTCAAATCAGAATTTGAACCCATGGAAACTACTTCTCAAGAAAACATGGATCAGGCCAATGAAACTATGATGGGATCAAACGGACTGACATCAATGGCTCCTCATGGATTCTTCCCCACTTATTTACCTGTTCCATATCCCATATGGCCATCAACTGCAGCTCCTTTTGAAGAAGTTAAGGGAGGAGAGACATCCCATCATCAGGTCCACAGGCCAATCCCAGTCATTCCCAAGGAACCTGTCAATGTTGACGAACTTGTGGGAATGTCTCATCTCAGCATTGGGGAAACACAGGTACGTGATAGAGAACCTTCCCCGCTTTCCTTAAACTTGTTAGGGGAACCCTCAAGGCAGTCAGCATTCCATGCAAATGCTCCAGTTGGTGGTACGGATTTAAAAACTGGCAAGAACAAAGCAATTCAAGCGGTTTGA 1068 0.5047 MTRRCSHCSNNGHNSRTCPSSRGAAAGVKLFGVRLTDGSIIKKSASMGNLNLASSAHHHSSPSSSNLAASSPNPTSPCSDLLHEPHGYLSDDPAHISTLANRRGERKKGVAWTEEEHRLFLIGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQSHATRRKRRSSLFDMVPDMTSDPPSVPEEQVLLPPSEKPQPCNGKLQPSLNLSLKSEFEPMETTSQENMDQANETMMGSNGLTSMAPHGFFPTYLPVPYPIWPSTAAPFEEVKGGETSHHQVHRPIPVIPKEPVNVDELVGMSHLSIGETQVRDREPSPLSLNLLGEPSRQSAFHANAPVGGTDLKTGKNKAIQAV* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1716 355 SMART sant 108 158 IPR001005 -
Pvu5g1716 355 Gene3D - 110 161 - -
Pvu5g1716 355 MobiDBLite consensus disorder prediction 332 355 - -
Pvu5g1716 355 MobiDBLite consensus disorder prediction 173 207 - -
Pvu5g1716 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 160 IPR017930 -
Pvu5g1716 355 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 107 159 IPR006447 GO:0003677
Pvu5g1716 355 ProSiteProfiles Myb-like domain profile. 104 156 IPR001005 -
Pvu5g1716 355 CDD SANT 111 156 IPR001005 -
Pvu5g1716 355 PANTHER TRANSCRIPTION FACTOR KUA1 1 348 - -
Pvu5g1716 355 PANTHER OS01G0187900 PROTEIN 1 348 - -
Pvu5g1716 355 SUPERFAMILY Homeodomain-like 106 160 IPR009057 -
Pvu5g1716 355 MobiDBLite consensus disorder prediction 53 78 - -
Pvu5g1716 355 ProSiteProfiles SANT domain profile. 112 160 IPR017884 -
Pvu5g1716 355 MobiDBLite consensus disorder prediction 1 21 - -
Pvu5g1716 355 MobiDBLite consensus disorder prediction 53 84 - -
Pvu5g1716 355 Pfam Myb-like DNA-binding domain 111 156 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1716 Pvu-Chr5 39113954 39119479 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu5g1716 Myb_DNA-binding 9.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1716 - - gmx:778036 597.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1716 5 39113954 39119479 Pvu5g1716 5 39113954 39119479 ECH