Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1712 ATGAATCATCCAACAAAGCACCGTTTGAGGTTGTTACTATTACATATAATTCTGCTTCGTCTTTGTTGCACAAGTTCTTATCCCACGCCAACAAACTGCACCGACACAAGCCGCGTTTGTACTTCGTTCTTGGCCTTCAAGCCTAAACCAAACCAAACCTTGCCTGTGATACAAAGCATGTTTGACGTGTTGCCCAGTGAGATCACTGTCGAAGACAATGGCTGGGATTATTTATTCATCAGGAAAAACTGTTCTTGTGATGCTGGCATGAAGAAGTTTGTGTCTAACACCACACTCACAGTGAAATCCAATGGAGGGTTTGTGCATGATTTGGTGAAGGAAGCCTATGATGGGCTTGCTCTCTTGCCCAACACGACACATTGGGCAAGAAAAGATCATGGTGTCATACCACTGAACTTGTTCTGTAGCTGCTCCAGTGGACTGTGGAACTATTTGATGAGCTATGTCATCAGAGATGGGGATAGTGTCGAATCACTAGCAAGCCGGTTTGGGGTTAGCATGGATAGCATTGAGACAGTGAATGGCATTGACAATCCTAGTAGCTTCACTGTTGGTTCTCTCTATTATATACCTTTGAATTCGGTTCCTGGTGAGCTTTATCACTTGAAGAATGACACTTCTCCAGTTCCAGTCCCTTCCCCATCTGTAGATGAAATTTCAGCTGAGCAAATCAAGCAGAAGGATCGTGTACCCCATGAATGGATTGTAGGAGGTTTTGGGGTTGGTCTCGCTCTGATAATATTAAGCATTATTGTCTGTGTGTCCCTGAGATCACCCAATTGCTTGGTTGAAGCCAGAAATAATGCAAAAAATTCTGCAGGAAAGATCTCCAATAAGTTCTATGTTTTTGGCAATCCAAAGTTGTTTTGTGGATGTGGCAAACCTGTGGACCAGAAGCAAACTGATGGTGAAACCAGCAATCACCAAATTACCTTGACCAAAGCATCTTCGTCTCTGGTACCTGACATGATGGACATGGATAGGCCTGTGCTTTTTTCATATGACGAGATTTTTGCCTCAACAGATGGTTTCTCTGATTCAAATCTACTTGGGGGTTCTGTTTACTATGGTCTCCTTCGTGACCAGGAAGTTGCTATTAAAAGAATTACAGCTACTAAAACTAAAGAATTTATGTCAGAGATAAAAGTTCTGTGCAAGGTTCATCATGCTAATCTGGTAGAATTGATCGGCTATGCGGCTAGTCATGATGATTTTTTCCTTATTTATGAATATGCTCAGAAGGGTTCACTCAGCAGCCATTTGCATGATACTCAAAATAAGGGTCATTCATCTCTTCCTTGGATCACAAGGGTCCAGATTGCACTTGATGCTGCTAGGGCCCTTGAATACGTACATGAACATACAAAAACTCGCTACGTCCATCAAGATATCAAGACAAGCAACATTTTACTTGATGCTTCTTTTAGAGCCAAGATATCAGATTTTGGGTTAGCAAAACTAGTTGGTAAAACAGATCAGGGAGAAACCACAGCATCCAATGTTGTAAATGCATATGGATATCTCGCTCCAGAATACTTTAACAATGGCCTTGCAACGACCAAAAGTGATGTTTATGCGTTTGGTGTTGTTCTTTTTGAGGTTATGTCAGGGAAGGAGGCCATCATTCAAACACAAGGTCCTGAAAAACGATCATTGGCATCTAGTATGTTGGCAATTCTTAGGAACTCACCTGATTCCGTTAGCATGTCGAGCACAAGAAACCTCGTTGATCCTACTATGATGGATCTGTATCCCCATGATTGTGTGCACAAGATGGCCATGCTGGCAAAGCAATGTGTGGAAAAGGATCCCGTATTACGCCCTGACATGAAGCAAGTTGTGATTTCCCTCTCACAAATCCTGCTGTCCTCTGTTGAGTGGGAAGCTACTCTTGCCGGGAACAGCCAGGTATTCAGCGGTCTTGTCCAGGGAAGATAG 1959 0.4278 MNHPTKHRLRLLLLHIILLRLCCTSSYPTPTNCTDTSRVCTSFLAFKPKPNQTLPVIQSMFDVLPSEITVEDNGWDYLFIRKNCSCDAGMKKFVSNTTLTVKSNGGFVHDLVKEAYDGLALLPNTTHWARKDHGVIPLNLFCSCSSGLWNYLMSYVIRDGDSVESLASRFGVSMDSIETVNGIDNPSSFTVGSLYYIPLNSVPGELYHLKNDTSPVPVPSPSVDEISAEQIKQKDRVPHEWIVGGFGVGLALIILSIIVCVSLRSPNCLVEARNNAKNSAGKISNKFYVFGNPKLFCGCGKPVDQKQTDGETSNHQITLTKASSSLVPDMMDMDRPVLFSYDEIFASTDGFSDSNLLGGSVYYGLLRDQEVAIKRITATKTKEFMSEIKVLCKVHHANLVELIGYAASHDDFFLIYEYAQKGSLSSHLHDTQNKGHSSLPWITRVQIALDAARALEYVHEHTKTRYVHQDIKTSNILLDASFRAKISDFGLAKLVGKTDQGETTASNVVNAYGYLAPEYFNNGLATTKSDVYAFGVVLFEVMSGKEAIIQTQGPEKRSLASSMLAILRNSPDSVSMSSTRNLVDPTMMDLYPHDCVHKMAMLAKQCVEKDPVLRPDMKQVVISLSQILLSSVEWEATLAGNSQVFSGLVQGR* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1712 652 ProSiteProfiles LysM domain profile. 153 197 IPR018392 -
Pvu5g1712 652 ProSiteProfiles Protein kinase domain profile. 303 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1712 652 Pfam LysM domain 155 187 IPR018392 -
Pvu5g1712 652 PANTHER BNAA06G02020D PROTEIN 32 652 - -
Pvu5g1712 652 SUPERFAMILY LysM domain 153 198 IPR036779 -
Pvu5g1712 652 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 32 652 IPR044812 GO:0019199|GO:0045087
Pvu5g1712 652 SMART LysM_2 154 198 IPR018392 -
Pvu5g1712 652 Gene3D Transferase(Phosphotransferase) domain 1 420 639 - -
Pvu5g1712 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Pvu5g1712 652 Pfam Protein tyrosine and serine/threonine kinase 359 622 IPR001245 GO:0004672|GO:0006468
Pvu5g1712 652 SUPERFAMILY Protein kinase-like (PK-like) 325 624 IPR011009 -
Pvu5g1712 652 Gene3D LysM domain 150 205 IPR036779 -
Pvu5g1712 652 Gene3D Phosphorylase Kinase; domain 1 325 418 - -
Pvu5g1712 652 CDD LysM 154 197 IPR018392 -
Pvu5g1712 652 SMART serkin_6 351 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1712 Pvu-Chr5 39083400 39088302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1712 30 652 Receptor kinase-like Gene Family AT1G51940 59.538 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Pvu5g1712 PK_Tyr_Ser-Thr 5.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1712 - - vra:106762524 1137.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1712 5 39083400 39088302 Pvu10g1508 10 41637660 41643876 PCT