Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1709 ATGGATGAAAGGTCAAGAAACGAGGTATCTCCTCAGCTGTTAGATTTGATCCCAAACGAGAGAGAGTGGCAGATGAACAGAAGCGAAGGAAAGTCCTCAGAGGAGAGAAAGCTTGAACTGAGGCTAGGTCCACCCGGTGAGGACTGGTCTCTCATTGGTAAAATGAAGAACGGCAACACAGAAAGAGAAGAGTCTCTTCTCTCTCTTGGCTGCTTACCTTCTTCGAACATGTCTCATGCAATACTGAGCCCCAACAATGGGTTCCAAAGCAAGGCCTCTCCATGGCCAAACTACCACAACCAGGGTAACAACAAAGCCTCTTCACCGTTCCTTCAGTTCCCATCAACCCCACCTGTGATGGGAAAAGATGCTTCACAAAACTGTTGTCCGAAGGTGGCAGAGTTGCATAATGGTTGTGGTGTGGGTGATAGCAAAGTGTTCTCTCCCTCTTCTGCAAATACAGCTGTGTCCCAGCCCAACACCTCTCAGAAAAGAACTGCTCCCGCTCCAGTGGTGGGGTGGCCCCCTATTCGTTCCTTCAGGAAGAACCTTGCAAGCAGCAGCGCTTCCAAGCCACCGACTGAGTCACAGCCTGAGCAGCACAACAAGGTGGCTGGTAAAAAACCTGTTGATAACTATGGTGGGAAAGGTTTGTTTGTTAAGATCAACATGGATGGAGTTCCAATAGGGAGAAAAGTGGACCTCAATGCTTATGACAGCTACGAAAATCTCTCTTCTGCTGTGGACGAGCTTTTCAGAGGTCTTCTTGCTGCTCAAAGAGATTCCTCTGCTGGTGGAGTTAACAACAAGCAGGATGAAGAGAAAGCAATCACGGGCTTATTGGATGGAAGTGGAGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTATCAACAGTGAAGAGGCTAAGAGTGTTGAAGAGTTCAGAGCTTTCTGCCTTTACCCGCAGTAAACAAGAGAAGATATCTCTTGACTCGGCCATGAAATGA 1029 0.4762 MDERSRNEVSPQLLDLIPNEREWQMNRSEGKSSEERKLELRLGPPGEDWSLIGKMKNGNTEREESLLSLGCLPSSNMSHAILSPNNGFQSKASPWPNYHNQGNNKASSPFLQFPSTPPVMGKDASQNCCPKVAELHNGCGVGDSKVFSPSSANTAVSQPNTSQKRTAPAPVVGWPPIRSFRKNLASSSASKPPTESQPEQHNKVAGKKPVDNYGGKGLFVKINMDGVPIGRKVDLNAYDSYENLSSAVDELFRGLLAAQRDSSAGGVNNKQDEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTRSKQEKISLDSAMK* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1709 342 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 6 333 - -
Pvu5g1709 342 MobiDBLite consensus disorder prediction 1 51 - -
Pvu5g1709 342 MobiDBLite consensus disorder prediction 22 43 - -
Pvu5g1709 342 Pfam AUX/IAA family 38 326 IPR033389 -
Pvu5g1709 342 MobiDBLite consensus disorder prediction 149 210 - -
Pvu5g1709 342 ProSiteProfiles PB1 domain profile. 217 321 IPR000270 GO:0005515
Pvu5g1709 342 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 333 IPR003311 GO:0005634|GO:0006355
Pvu5g1709 342 MobiDBLite consensus disorder prediction 149 167 - -
Pvu5g1709 342 Gene3D - 213 333 - -
Pvu5g1709 342 SUPERFAMILY CAD & PB1 domains 211 318 - -
Pvu5g1709 342 MobiDBLite consensus disorder prediction 181 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1709 Pvu-Chr5 39062130 39066140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1709 221 337 B3 DNA Binding Superfamily AT4G23980 33.333 9.00e-14 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pvu5g1709 AUX_IAA 7e-72 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1709 K14484 - gmx:100804593 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1507 10 41625007 41628589 Pvu5g1709 5 39062130 39066140 ECH
Pvu5g1709 5 39062130 39066140 Pvu5g1709 5 39062130 39066140 ECH
Pvu5g1709 5 39062130 39066140 Pvu10g1507 10 41625007 41628589 PCT