Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1708 ATGGGCAAAGCTACTAGATGGTTGAAGGGGTTGCTGGGAATAAAGAAAGAGAGAGACTACTGTGGCTATTCGAGCTCACTGGCCCCTGACAAGAGAGAAAAGAAACAATCACAGAAGGATGGAGAGAGTCACATTACACCATCCACCCTTGATCATACTGGACACAGATTCTATGTTGCCAAAAAAGAGGGTGTGAAGAAGAAACAAGTTGAGAAATCAAGAAGGTGTGGCAGAGACACCTTGCTAATTGGAAGCAAGGAGTGCTGGGCTGCTGTGTCAATTCAATCCTTTTTCAGAGGTTATTTGGCGCGAAAAGCTCTCAGAGCACTCAAAGGATTGGTTAAGATACAGGCTCTTGTTAGAGGGTATCTAGTTAGAAAAAGGGTTGCTGCAACTCTTCACAGTGTTCAAGCAATGATAAGATCTCAAGCTGTTGCTCGATCAGTTCGAGCTCGTCGTTCCATGGACAAGGAGAATAGATTTCATCCAGAATCTCCTTCCAGAAAATATGTGCAACTGTTTGATGAAACAAGAAATTATCAATGTGGCAATAGAAGGGCAACCATATACTCTAAGGAGCCCTGGAATGGATTTGATGAGAGCTCAAAAGTTGTTGAGGTTGATACTCGCATGGCCCATTCAAGATGCAGGAGCATCAACACTGCAATGTCTGAATGTGGAGAGTATCAAGCAATGTCATCTTCTCTTCCATGTCCAGTTCAAGGTAGAATCTCACTTCATCAAAAACAGCACCCTCAAGAGTTTGAATGGTTCTTCAATCTTGATGAAGACAACAAGTTCACCACAGCACACAACACACCTCGTTTACCAAAATGTATGATACCAGCTACTCCTCTGAAGAGTGTTTGTGGGGATACCTTCAGGCCTTGCTCCAATTTTCCCAACTACATGGCCAATACTCACTCTTCTAAGGCCAAACTAAGGTCTCACAGTGCTCCAAAGCAAAGACCTGAACTAAGAAAAAGGCTTTCAATCAATGAAATTATGGCAGCCAGAAACAGTGTTAGTGGTGTTGGAAAACAGTGGTCATCCAACCCAAAAACTCAAGATTACTACTTTTTTGACAAGGTTATGTAG 1098 0.4271 MGKATRWLKGLLGIKKERDYCGYSSSLAPDKREKKQSQKDGESHITPSTLDHTGHRFYVAKKEGVKKKQVEKSRRCGRDTLLIGSKECWAAVSIQSFFRGYLARKALRALKGLVKIQALVRGYLVRKRVAATLHSVQAMIRSQAVARSVRARRSMDKENRFHPESPSRKYVQLFDETRNYQCGNRRATIYSKEPWNGFDESSKVVEVDTRMAHSRCRSINTAMSECGEYQAMSSSLPCPVQGRISLHQKQHPQEFEWFFNLDEDNKFTTAHNTPRLPKCMIPATPLKSVCGDTFRPCSNFPNYMANTHSSKAKLRSHSAPKQRPELRKRLSINEIMAARNSVSGVGKQWSSNPKTQDYYFFDKVM* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1708 365 Pfam IQ calmodulin-binding motif 114 128 IPR000048 GO:0005515
Pvu5g1708 365 Pfam IQ calmodulin-binding motif 90 108 IPR000048 GO:0005515
Pvu5g1708 365 Gene3D - 53 112 - -
Pvu5g1708 365 Gene3D - 113 161 - -
Pvu5g1708 365 PANTHER IQ-DOMAIN 5-RELATED 1 364 - -
Pvu5g1708 365 Pfam Protein of unknown function (DUF4005) 269 343 IPR025064 -
Pvu5g1708 365 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 364 - -
Pvu5g1708 365 SMART iq_5 86 108 IPR000048 GO:0005515
Pvu5g1708 365 SMART iq_5 109 130 IPR000048 GO:0005515
Pvu5g1708 365 MobiDBLite consensus disorder prediction 23 49 - -
Pvu5g1708 365 ProSiteProfiles IQ motif profile. 111 138 IPR000048 GO:0005515
Pvu5g1708 365 ProSiteProfiles IQ motif profile. 90 115 IPR000048 GO:0005515
Pvu5g1708 365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 130 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1708 Pvu-Chr5 39043664 39046272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1708 1 345 IQD Protein Family AT3G16490 41.730 2.03e-69 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1708 - - gmx:100797296 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1708 5 39043664 39046272 Pvu5g1708 5 39043664 39046272 ECH
Pvu5g1708 5 39043664 39046272 Pvu10g1504 10 41597488 41600506 PCT