Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1706 ATGTCTTGGCAAACCTACGTGGATGACCACCTAATGTGCGATTTCGACGGCCACACTCTGGCGGCCGCCGCCATCATCGGCCACGACGGCACTGTGTGGGCGCAGAGCTCCACATTTCCTGAGGCATTATATGAACCTGGAAGGCTTGCCCCAACGGGCCTGCTCCTCGGTGATACCAAGTACATGGTCATCCAAGGTGAACCTGGAGCTGTTATTCGCGGCAAGAAGGGTGGTGGTGGAATCACTGTTAAGAAAAGTAAGAAAGGTTTGGTGATTGGCATCTATGAGGAACCTCTGCCTCCAGGACAGTGTAACATGATTGTTGAGACTCTGGGAGATTATTTGATTGAGCAGGGCCTATAG 363 0.5234 MSWQTYVDDHLMCDFDGHTLAAAAIIGHDGTVWAQSSTFPEALYEPGRLAPTGLLLGDTKYMVIQGEPGAVIRGKKGGGGITVKKSKKGLVIGIYEEPLPPGQCNMIVETLGDYLIEQGL* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1706 120 Pfam Profilin 1 119 IPR005455 GO:0003779
Pvu5g1706 120 PANTHER PROFILIN-A 1 120 - -
Pvu5g1706 120 SUPERFAMILY Profilin (actin-binding protein) 2 119 IPR036140 -
Pvu5g1706 120 CDD PROF 2 119 IPR005455 GO:0003779
Pvu5g1706 120 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Pvu5g1706 120 PRINTS Plant profilin signature 1 6 IPR005455 GO:0003779
Pvu5g1706 120 PRINTS Plant profilin signature 41 55 IPR005455 GO:0003779
Pvu5g1706 120 PRINTS Plant profilin signature 60 69 IPR005455 GO:0003779
Pvu5g1706 120 PRINTS Plant profilin signature 73 88 IPR005455 GO:0003779
Pvu5g1706 120 PRINTS Plant profilin signature 93 106 IPR005455 GO:0003779
Pvu5g1706 120 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779
Pvu5g1706 120 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Pvu5g1706 120 PRINTS Profilin signature 53 67 IPR005455 GO:0003779
Pvu5g1706 120 PRINTS Profilin signature 89 102 IPR005455 GO:0003779
Pvu5g1706 120 PRINTS Profilin signature 102 119 IPR005455 GO:0003779
Pvu5g1706 120 Gene3D Dynein light chain 2a, cytoplasmic 1 120 - -
Pvu5g1706 120 SMART prof_2 1 120 IPR005455 GO:0003779
Pvu5g1706 120 PANTHER PROFILIN 1 120 IPR005455 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1706 Pvu-Chr5 39039413 39040373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1706 1 120 Cytoskeleton Gene Families AT4G29340 65.672 1.14e-59 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1706 K05759 - gmx:100809393 194.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3165 2 46987656 46989630 Pvu5g1706 5 39039413 39040373 ECH
Pvu5g1706 5 39039413 39040373 Pvu5g1706 5 39039413 39040373 ECH