Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1681 ATGGTCGGTCACAATTATGATGGCCAAAATATTCCACCTCAGTTTGATCTTCTTCTGGGAGCTAACCTGTGGGATACAGTGATTATAGAAAAGGCATCCATTACCCGAAACAAGGAGATCATACATGTACCTTTACAGGATTTCGTACAAATCTGTCTGGTTAACACAGGAAATGGTACACCATTTATAACAGCCATTGAATTGAGAACTTTGAAAAATGATATATACGTCACTGAATCGGGATCACTGGAACGTTACCTGCGGCGCGATTTGGGTTCTAACACAATCTACAGGTACCCGGTTGATATTTATGATCGTTTCTGGTTTACCCGTGACTTCCAGGAAGATTGGACAAACCTAAGTGCTTCGATTCCAGATGATTCTTTCAATCAGGGCGATTACCAACTGAGAGCTATTATCATGAGCACCGCAGTTAGACCGGCAAATGATAGTGCTCCGTTGGTAATAAGCTGGGAGCCACAAGATGAAACTGATGAATTCTATGTTTACATGCACTTCACAGAGATTCAAGAGTTAACCACCAATCAGACAAGACAATTCAACATCATGAGGAACGGTGAATTATGGATTCCAAATTTTTCTCCACGATACCTGTTCGTCGACACTTTATATGTCAGTGGAAAAGAAATTAAATATTCCCTCGTGAGGACCGGAAATTCAACCCTGCCTCCCATCATCAGTGCCCTTGAAATTTACACAGTAATAGACTTACAGAAACCTCAAACACTCCAAGGAGATGTTGATGCGATTACAAGCATCAAGTCAGTTTATGGAGTGAAAAGCGATTGGCAAGGTGATCCATGCGCCCCTGCAGCCCACTTGTGGGATGGTTTGAACTGTACTTATGGCGACAATGAGTTCCCAAGAATCACAACTTTGAATTTATCTTCGAGTGGATTGTCAGGAAAGATAGACCCTTCAGTCTCAATGCTCACCATGTTGGAGAAGCTAAACTTGGAGAAGAATAACCTCTCCGGTTCAATTCCCTCTGCACTTGTTGAGAAATCTGAGGAAGGTTCTCTCACCCTAAGTGTGGGTCAAAATCCATATCTATGTGAATCTGGTCAATGCAAGGAGACGAAAAAGAAAAACACTGTTATACCCATAGTAGCATCAATTTGTGGGGTATTATTAATTCTTCTAATAGCCGTTGCAATATTATTGTGGACTCTTAAAAGGAGAAAACGCAAAGTTAGAATCACCAACAAATTCAATACAATTGTTGGTAAAGGTGGGTTTGGAACAGTTTATCTGGGTTATATTGATGACACTCCCGTGGCAGTGAAAATGTTTTCTCCTTCATCACTTCATGGTTATCGACAATTTCAAGCAGAAGTTAAAACTCTAATGAGGGTTCACCATGCAAATCTCACCTCCCTTTTTGGTTATTGTAATGAAGGAGATTATAAGGGTCTCATATATGAGTACATGGCTAACGGAGACTTACAAGAACATCTGTCT 1482 0.4069 MVGHNYDGQNIPPQFDLLLGANLWDTVIIEKASITRNKEIIHVPLQDFVQICLVNTGNGTPFITAIELRTLKNDIYVTESGSLERYLRRDLGSNTIYRYPVDIYDRFWFTRDFQEDWTNLSASIPDDSFNQGDYQLRAIIMSTAVRPANDSAPLVISWEPQDETDEFYVYMHFTEIQELTTNQTRQFNIMRNGELWIPNFSPRYLFVDTLYVSGKEIKYSLVRTGNSTLPPIISALEIYTVIDLQKPQTLQGDVDAITSIKSVYGVKSDWQGDPCAPAAHLWDGLNCTYGDNEFPRITTLNLSSSGLSGKIDPSVSMLTMLEKLNLEKNNLSGSIPSALVEKSEEGSLTLSVGQNPYLCESGQCKETKKKNTVIPIVASICGVLLILLIAVAILLWTLKRRKRKVRITNKFNTIVGKGGFGTVYLGYIDDTPVAVKMFSPSSLHGYRQFQAEVKTLMRVHHANLTSLFGYCNEGDYKGLIYEYMANGDLQEHLS 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1681 494 ProSitePatterns Protein kinases ATP-binding region signature. 415 436 IPR017441 GO:0005524
Pvu5g1681 494 Pfam Protein tyrosine and serine/threonine kinase 411 493 IPR001245 GO:0004672|GO:0006468
Pvu5g1681 494 ProSiteProfiles Protein kinase domain profile. 409 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1681 494 CDD TM_EGFR-like 376 406 - -
Pvu5g1681 494 PANTHER PUTATIVE-RELATED 315 404 - -
Pvu5g1681 494 PANTHER PUTATIVE-RELATED 405 494 - -
Pvu5g1681 494 PANTHER PUTATIVE-RELATED 5 324 - -
Pvu5g1681 494 Pfam Malectin-like domain 4 241 IPR024788 -
Pvu5g1681 494 SUPERFAMILY Protein kinase-like (PK-like) 403 493 IPR011009 -
Pvu5g1681 494 PANTHER OS07G0107800 PROTEIN-RELATED 5 324 - -
Pvu5g1681 494 PANTHER OS07G0107800 PROTEIN-RELATED 315 404 - -
Pvu5g1681 494 PANTHER OS07G0107800 PROTEIN-RELATED 405 494 - -
Pvu5g1681 494 SUPERFAMILY L domain-like 246 339 - -
Pvu5g1681 494 Gene3D Ribonuclease Inhibitor 253 357 IPR032675 -
Pvu5g1681 494 Gene3D Phosphorylase Kinase; domain 1 415 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1681 Pvu-Chr5 38832800 38835402 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1681 5 494 Receptor kinase-like Gene Family AT2G19210 43.876 1.48e-145 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Pvu5g1681 Malectin_like 2.6e-73 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1681 - - pvu:PHAVU_005G163200g 980.704