Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1672 ATGGGAATGTCATCATCTACTTTCGTAGGAACTCTAGTTCTTGTCCTTCTGATTCAAGCTAAGGGCCAACCAGGATTCATCAGCATAGATTGCGGAGCTGAAGCAGGTGCGAACTATACTGAGCCGTCATTACACATAAATTTAGGGACAATAGCATCTGAAGAGATCAGCACACACACTCAACAACAACTGCGGAGTCTGAGAAGCTTCCCAGAAGGAAAAAGGAACTGCTACAAAATAAACATCACAAGAGGCTCTAAGTATCTCATCCGCACTCTTTTTCTGTATGGAAATTATGATGGCCGCAATATGTCACCGCAGTTTGATCTTCATCTGGGAGCTAACCTGTGGAATACAGTGACTATAAGAAATGCATCCATTACCCAATCCAATGAGATCATACATGTACCTTTACTTGATTTTATACAAATCTGTCTGGTTAACACAGGAAATGGTACACCATTTATAACAGCCATAGAATTGAGGACTTTGAAAAATGATACATACGTCACTAAATCGGGATCACTGGAACGTTACCTGCGGTGCAATTTGGGTTCTAACACAGCCTACAGGTACTCGGCTGATGTTTATGATCGTTTATGGTATACCTGTGACTTCGAGGAAGATTGGACACCGCTAAATGCCTCGATTCCTGATGATTCTTTTGTTGATAACGATTTCAAACCGGGAGCAACCATCATGAGCACCGCAGTTACACCAGCAAATGGTAGTGCTCCGTTGGTAATAAGCTGGGAGCCACAAGATGAAACTGATGAATTCTATGTTTACATGCACTTCACGGAGCTTCAAGTGTTAACCGGGAATCAGACAAGACAATTCAACATCACCATGAACGGTAAATTATGGTATGAAAATTGTTCTCCGCAGTACATGAGCGTCAGCACTATATATAGCCCGCCAGGCGGCAGCGGAAAAGAAATTAAATTTTCCCTGGAGAGGACTGAAAATTCAACCCTACCTCCCATCATCAATGCCATTGAAATTTACAAAGTAAAACAATTTCATCAATCTGATACATTCCAAGGAGATGTTGATGCCATTACAAGCATCAAGTCAGTTTATGCGGTGACAAGAGATTGGGAAGGTGATCCATGCGCCCCTGCAGCCTACTTGTGGGATGGTCTCAATTGTTCTTATCAAGGAATTGAGTCTCCAAGAATCACAACTTTGAATTTATCTTCAAGTAGATTGCATGGAAAGATTTTCCCTTCAATTTCAAATCTCACCATGCTGGAGATATTGGATTTATCAAACAATAGCTTAAACGGTGAAATTCCTGATTTTCTGTCACAACTACAACACTTAAAGATCTTTGTCGACCAAAATCCATATCTATGTGAAGCTGATCAATGCAACAAGAAGAAAAACAAGAAACACAAAAGCATTGCTACACCCATAATAGCATCAGTTGGCGGGGTTTTGATCCTTCTGGTAGTTGTGGCAGCTATATTGTGGACCGCTAAAAGAAGAAATGCTAAAGCTTTGATGTTAAAAAAGGATCAAAGTGCCATATCACCGCAATACACTGAACAAAATGATTCATCACTTCGATTCCAAAAACAAATATATTCATACTCTGATATCGTTAAAATCACCAACAATTTCACTACAATTGTTGGTAAAGGAGGATTTGGAACAGTTTATCTGGGCTATATCGAAGACACTCCAGTTGCAGTGAAAATGCTTTCCCCATCATCTGTTCATGGTTATCAACAATTTCAAGCAGAGGTTAAACTTCTTATGAGAGTTCATCACAAAAATTTGACATCCCTTGTTGGTTACTGTGATGAAGGGACCAATAAGGGTCTCGTATACGAGTACATGGCCAATGGAAACTTACAGGAACATCTATCTGGTAACCGAAGCAAAAGAAATTTCTTCAGCTGGGAAAAGAGACTTCGAATCGCAGTGGATGCAGCCTCAGGATTGGAGTATCTGCAAAATGGTTGTAAGCCACCAATATTCCACAGAGATGTAAAATCTACAAACATCTTGTTGAATGAACACCTCCATGCAAAATTATCTGATTTTGGTCTGTCCAAAGCTGTCCTAACAGATGGGGGAACTCATGTGTCAACTGTCATTGCTGGTACTCCTGGTTATCTAGACCCTGAATACTACCTAACCAGTAGATTAACAGAGAAGAGCGACGTTTATAGCTTTGGCGTTGTGCTTCTAGAGATAATCACGGGGCAACCAGTGATAGCGAAGAATGAAGAAAAAAGTCACATAAGTGAATGGGTTAGGTCCTTGATTGGGAAAGGTGATATCAATGCTATTGTTGACTCAAGGTTAGAAGGAGAGTTTGATAGTAACTCAGTTTGGAAAGCAGTAGAAATAGCAACGGCATGTGTATCTCCAAATCCCAACAGAAGGCCAATCATAAGTGTGGTAGTGAGTGAACTGAAGGAGTCTTTCGCTACAGAATTAGCTCGAACTAAGCATAGAAGGACTGATACAAGTGATTCAGTTAAACAGGTCGCCATGAATCTGAATACAGAATATCTTCCCCAGGCCAGGTAA 2544 0.4057 MGMSSSTFVGTLVLVLLIQAKGQPGFISIDCGAEAGANYTEPSLHINLGTIASEEISTHTQQQLRSLRSFPEGKRNCYKINITRGSKYLIRTLFLYGNYDGRNMSPQFDLHLGANLWNTVTIRNASITQSNEIIHVPLLDFIQICLVNTGNGTPFITAIELRTLKNDTYVTKSGSLERYLRCNLGSNTAYRYSADVYDRLWYTCDFEEDWTPLNASIPDDSFVDNDFKPGATIMSTAVTPANGSAPLVISWEPQDETDEFYVYMHFTELQVLTGNQTRQFNITMNGKLWYENCSPQYMSVSTIYSPPGGSGKEIKFSLERTENSTLPPIINAIEIYKVKQFHQSDTFQGDVDAITSIKSVYAVTRDWEGDPCAPAAYLWDGLNCSYQGIESPRITTLNLSSSRLHGKIFPSISNLTMLEILDLSNNSLNGEIPDFLSQLQHLKIFVDQNPYLCEADQCNKKKNKKHKSIATPIIASVGGVLILLVVVAAILWTAKRRNAKALMLKKDQSAISPQYTEQNDSSLRFQKQIYSYSDIVKITNNFTTIVGKGGFGTVYLGYIEDTPVAVKMLSPSSVHGYQQFQAEVKLLMRVHHKNLTSLVGYCDEGTNKGLVYEYMANGNLQEHLSGNRSKRNFFSWEKRLRIAVDAASGLEYLQNGCKPPIFHRDVKSTNILLNEHLHAKLSDFGLSKAVLTDGGTHVSTVIAGTPGYLDPEYYLTSRLTEKSDVYSFGVVLLEIITGQPVIAKNEEKSHISEWVRSLIGKGDINAIVDSRLEGEFDSNSVWKAVEIATACVSPNPNRRPIISVVVSELKESFATELARTKHRRTDTSDSVKQVAMNLNTEYLPQAR* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1672 847 CDD STKc_IRAK 546 811 - -
Pvu5g1672 847 Pfam Malectin-like domain 29 338 IPR024788 -
Pvu5g1672 847 SUPERFAMILY Protein kinase-like (PK-like) 518 808 IPR011009 -
Pvu5g1672 847 Gene3D Phosphorylase Kinase; domain 1 527 614 - -
Pvu5g1672 847 Gene3D Ribonuclease Inhibitor 352 463 IPR032675 -
Pvu5g1672 847 ProSitePatterns Serine/Threonine protein kinases active-site signature. 661 673 IPR008271 GO:0004672|GO:0006468
Pvu5g1672 847 SMART serkin_6 540 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1672 847 ProSitePatterns Protein kinases ATP-binding region signature. 546 567 IPR017441 GO:0005524
Pvu5g1672 847 Pfam Protein tyrosine and serine/threonine kinase 543 809 IPR001245 GO:0004672|GO:0006468
Pvu5g1672 847 PANTHER OS07G0107800 PROTEIN-RELATED 12 444 - -
Pvu5g1672 847 PANTHER OS07G0107800 PROTEIN-RELATED 446 847 - -
Pvu5g1672 847 ProSiteProfiles Protein kinase domain profile. 540 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1672 847 Gene3D Transferase(Phosphotransferase) domain 1 615 837 - -
Pvu5g1672 847 SUPERFAMILY L domain-like 348 445 - -
Pvu5g1672 847 PANTHER PUTATIVE-RELATED 12 444 - -
Pvu5g1672 847 PANTHER PUTATIVE-RELATED 446 847 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1672 Pvu-Chr5 38726103 38734047 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1672 15 847 Receptor kinase-like Gene Family AT1G51800 45.640 0.0 769
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Pvu5g1672 Malectin_like 1.3e-98 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1672 - - pvu:PHAVU_005G162300g 1671.37