Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1668 ATGGACGGTCTAAGTTGGGATTCCTCATCACAACTTGTTGGTAACATACCGAGCTTGTGGAGTAGTCATCCTCAAGACCTTGAAGGAGAGTATCATCATTCCTTGCCACACCTTTTTTCAAGTGTTCTCAATCAAACAGGTTATCCATATCCCTGTTCTGAAAAAGAAAGGGAGATGGTTCACCCATCCACTTCTGAGATAATGAGTATTCTGTCACAAAGAACAGCAACCATGCCTGTGAAATCAGGAGCAGCTGGAGCCAGTTGGGGAGAAGCTTTAACATCCCAATCATGTCCCTCCCTTTCTGCCAATATGAACCAAACTAGCAATTATCAAACAGATTTCAACACGAGCCACCAGCAAGAACACCTTATCAATGGTATACAAAACGGCAAGGCTACCTGTTCTCTTGAGTCACTTGATTGCTTGCTTTCAGATACTAAAAATGGCAACACAGACACATCTATCGAAGATGATGGGATTTCCATGATGGTTTTATCTGACTGCACAAACTTATGTAACTTCAATTATGGCAGTGCAGTTTCCTCGGGTGAATCTGAGAGCAATGCTTCCAATGCAAGAAACAGTGACATGCAGTATCCATCAGTGAATGAGCTGGATGAAACAGTGTCTCAAAGCTTCTCAGATCAATATATCAGTCAAGCAAGAGTTATAGATTCTGAAGTTATTTGCACAAAAGGGAGCAATTCATGCTTCAGCATTGCTCATAATTCTTTCAGGCTTGTCTCAGAGACTTCACCAAAGTCCAAGAGACCCAGATGGGATAAGCATCCTGGTTCATCAAATATCAACTTCCAGCAGCCAAATTCATCTGTGTCACCTTCCTTTGAAGAACCTGATCCAGAGGCAGTAGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTAGGCCAGTGAACTTGGGATTGGAAGTGGTGGAAAAGCCTAAGAGGAAGAATGTTAAGATATCAACTGATCCACAGACTGTGGCTGCCAGGGAAAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTGCCTGGTGGAAGCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCAAACTACCTCAAGTTTCTCAGAGCACAAGTCAAAGCACTAGAAAATATAGGTAACAAGCTTCAGACAGTGAATTCTCCTCCTAACATAGCCTTCTCTTTCAACCCTTCTTTTCCCATACAAACACATTTCCCCCTCCAAAACCCTAGCGGCCACACCCATATCCAACATTCCAAGGGTTGGAAATGA 1287 0.4289 MDGLSWDSSSQLVGNIPSLWSSHPQDLEGEYHHSLPHLFSSVLNQTGYPYPCSEKEREMVHPSTSEIMSILSQRTATMPVKSGAAGASWGEALTSQSCPSLSANMNQTSNYQTDFNTSHQQEHLINGIQNGKATCSLESLDCLLSDTKNGNTDTSIEDDGISMMVLSDCTNLCNFNYGSAVSSGESESNASNARNSDMQYPSVNELDETVSQSFSDQYISQARVIDSEVICTKGSNSCFSIAHNSFRLVSETSPKSKRPRWDKHPGSSNINFQQPNSSVSPSFEEPDPEAVAQMKEMIYRAAAFRPVNLGLEVVEKPKRKNVKISTDPQTVAARERRERISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRAQVKALENIGNKLQTVNSPPNIAFSFNPSFPIQTHFPLQNPSGHTHIQHSKGWK* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1668 428 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 424 IPR045843 GO:0003700|GO:0006355
Pvu5g1668 428 Gene3D - 329 392 IPR036638 GO:0046983
Pvu5g1668 428 Coils Coil 363 383 - -
Pvu5g1668 428 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 330 388 IPR036638 GO:0046983
Pvu5g1668 428 Pfam Helix-loop-helix DNA-binding domain 334 373 IPR011598 GO:0046983
Pvu5g1668 428 SMART finulus 330 379 IPR011598 GO:0046983
Pvu5g1668 428 MobiDBLite consensus disorder prediction 250 285 - -
Pvu5g1668 428 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 324 373 IPR011598 GO:0046983
Pvu5g1668 428 MobiDBLite consensus disorder prediction 266 283 - -
Pvu5g1668 428 PANTHER TRANSCRIPTION FACTOR BHLH87 1 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1668 Pvu-Chr5 38687942 38689762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1668 89 420 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 46.610 3.31e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu5g1668 HLH 3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1668 - - gmx:100793830 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1668 5 38687942 38689762 Pvu5g1668 5 38687942 38689762 ECH
Pvu5g1668 5 38687942 38689762 Pvu10g1487 10 41488747 41490099 PCT