Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1654 ATGGACGCCGAAGCGGACTCAACTCAAATCCCTAATATAAGACACAAATGCCCGGCATGCTATAAACAATTCAAGAAGAAAGAGCATCTAACTGAGCACATGAAAACCTCAAACCATTCCGTCCATCAGCCTGCATGTGGGGTCTGTCAAAAGCACTGCAAATCTTTTGAGTCTCTGAGGGAACATCTTACTGGTCCTTTGCCAAAAGGAGTTTGTTCAAAGATTTTCTCTCAGCGGGGCTGTCAACTTTGCTTGGTACTATTTGATAGTCCCGGGTCTCTCGTTTCTCACAGAGAAACATGTCGCTTATCTGCCCCTACTCGTCTAGGAACACGAGAACTGCCCTGTATAGATTCCCAATTTGACTGTCTAGATTCTTCTGATGAAAACCATGCTGGCTGGGGCCCCGGAGGAGCAGTTGGAATGGACTGTGAAATGGTTGGTGGTGGAAGTGATGGTTCTCTGGAACTTTGTGCAAGAGTATGCTTGGTTGATGAGGATGAGAACTTAATCTTTCATTCATATGTACAACCTCAAATACCTGTTACCAATTACAGATATGATATAACTGGATTGACAGAAGAACATCTCAGAAATGCCATGCCCCTTTATGAAGTTCGAGAAAAGATTTTGCAAATGCTATACAATGGAGAATCCATTGGCAAAGTTAGACTAAATGGTGGAAAGGCCAGGCTTCTTGTGGGGCATGACTTAGCACACGATTTAGATTGCTTGAAAATGAATTATCCTGATCATATGCTAAGAGACACTGCAAAGTACCGTCCTTTGATGAAGACAAACTTCGTCAGCCATTCGCTCAAGTATCTCACCCGAACATATCTTGGTTATGATATCCAATCCGGCACTCATGATCCGTATGAAGATTGCATTTCTGTCATGAGACTATACAAGAGAATACGAGCTCAAATTCATCCAGAGGAAGCCCATGAAACACCGAGTCACAACATTGTTTGCGTGCCTGATAGCTGGAGATCCAGGGAACTTGAGAACCTCACTCCAGATCAGCTCTATGCCATGTCAAAATCGGATTACAAGTGTTGGTGCTTGGATTTGAGGCCTAGATTGGCATCCTGA 1095 0.4365 MDAEADSTQIPNIRHKCPACYKQFKKKEHLTEHMKTSNHSVHQPACGVCQKHCKSFESLREHLTGPLPKGVCSKIFSQRGCQLCLVLFDSPGSLVSHRETCRLSAPTRLGTRELPCIDSQFDCLDSSDENHAGWGPGGAVGMDCEMVGGGSDGSLELCARVCLVDEDENLIFHSYVQPQIPVTNYRYDITGLTEEHLRNAMPLYEVREKILQMLYNGESIGKVRLNGGKARLLVGHDLAHDLDCLKMNYPDHMLRDTAKYRPLMKTNFVSHSLKYLTRTYLGYDIQSGTHDPYEDCISVMRLYKRIRAQIHPEEAHETPSHNIVCVPDSWRSRELENLTPDQLYAMSKSDYKCWCLDLRPRLAS* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1654 364 Pfam Exonuclease 140 303 IPR013520 -
Pvu5g1654 364 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Pvu5g1654 364 CDD REX4_like 140 304 IPR037431 GO:0006364|GO:0008408
Pvu5g1654 364 Gene3D - 138 321 IPR036397 GO:0003676
Pvu5g1654 364 PANTHER EXONUCLEASE FAMILY PROTEIN 12 360 - -
Pvu5g1654 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
Pvu5g1654 364 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 12 360 - -
Pvu5g1654 364 SUPERFAMILY Ribonuclease H-like 140 306 IPR012337 -
Pvu5g1654 364 SMART exoiiiendus 138 312 IPR013520 -
Pvu5g1654 364 Gene3D Classic Zinc Finger 2 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1654 Pvu-Chr5 38584651 38589007 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1654 1 357 C2H2 Transcription Factor Family AT3G27970 50.964 1.21e-133 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1654 K18327 - gmx:100805841 656.751