Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1652 ATGGAGGAAATGCCTAAGTTCATCCATGGAACAATTGAAGCTACCATCTTCAATGCCACACCTTACTCACCTTTGTTTCCCTTCAATTGTGTATATACAAAAGGAAAGCCTGTTCATGTGTCTATCAGGATAGGCAAACAGAAGGTGGCGAAAACGACCCAAGAACGTGAACGTGTGTGGAACCAAACCTTTCAGATTCAGTGTGCTCATTCGGAAGATTCAACTATCACCATTACACTGAAGACATCATGCTTCATTTTGGGGAAATTCCACATGCAGGCCAAGCGGCTGAAGGAAGAGAGTTTGATCAATGGATTATTCCCTCTCCTCATGGAAAATGGAAAACCAAATCCACAACTAAAATTAAGATTTATGTTGTGGTTCAAGCCAGCAGAAATGGAACCAAGTTGGACAAATATACTATTTAATGGGGAGTTTCAAGGGCTGAGGGATGCTACATTCCCACAAAGGTCCAATTGCCAGGTTAAACTCTATCATGATGCTCACCATTCATCTACCTTCCACCCTCCTTTTGACCTTTGTGGCTCTCCAATAAAGCTCTGGGAAGATGTCTATAAAGCCATTGAGGGTGCAAAATATTTGATTTATATTGCAGGCTGGTCTTTCAATCCCAAGATTGTTCTGGTTAGAGATCCTGAAACAGAAATCCCTCATGCTAGGGAGATAAATCTGGGTGAGTTATTGAAGAAGAAGGCAGAAGAAGGAGTGGCTGTGAGGGTTATGGTTTGGGATGATGAAACATCTTTGCCTTTTATTAAGAACAAGGGTGTGATGAACACTCATGATGAGGAAGCTTTTGCATACTTCAAACACACTAAAGTAATATGCAGAAAGTGTCCCAGGTTACACCACAAGTTCCCCACACTCTTTGCTCACCATCAGAAGACCATAACTGTGGACACCAGAACACCCTACTCTGTTCATGCAAGAGAAATTATGAGCTTTTTGGGTGGTTTAGATTTGTGTGGTGGCCGATATGACACAGAAAAACACTCATTGTTTCAGACACTTGCTGAGGAATCCGAATACCATGACTTCTACCAGACAAACATTGCACAAGCTAGCCTCAAGAGAGGAGGACCAAGAGAACCTTGGCATGATGCTCATGCTTGTGTCATTGGTGAGGCTGCTTGGGATGTTTTGACCAATTTTGAGCAAAGATGGACAAAGCAGTGTGATCCTTCTCTTCTAGTTCCTGCCAACACTTTAGAAAATCTCATTCCCACATACTCAGGCACTCCAGTAGGAAGAAATTGGAAAGTTCAAGTATACAGGTCAATTGACCATGTATCTGCTAGCCAGTTGTTTAGAAGGCTAACTGTGGAGAGAAGCATCCATGAAGCTTATGTTGAAGCAATTAGGCGTGCCGATAGGTTTGTATACATTGAAAACCAATATTTTGTTGGAGGGTGTCATTTGTGGCAAGAAGATAGGCACAGTGGATGCAGCAATCTGATTCCAATTGAGATTGCACTCAAGGTGGTTAGTAAGATCAAAGCAAGAGAGAGGTTTGCAGTGTACATAGTCATACCAATGTGGCCAGAAGGAGTTCCTGAAAGTGAACCAGTCCAAGATATACTTCACTGGACCAGACAAACAATGACAATGATGTATCGGTTCATTGGAGAAGCAATAATAGAAAGTGGGGAGCCAGGGCATCCAAGAGATTACTTGAATTTCTTCTGCCTTGCTAATAGGGAAAAGAAGGAACAAGAGGAGTTTCTTCCACCACTTTCTCCCCATCCTGCAACACAATACTGGAATGCACAAAAGAATAGAAGGTTCCCTATTTATGTTCACTCAAAGATGATGATAGTGGACGACATATACATACTAATAGGATCAGCCAATGTGAACCAAAGATCCATGGATGGACAAAGGGACACTGAGATTGCCATAGGGGCTTACCAGTTTCAAGATGGAGTTGATCACCACATAAACCATGGTGATATTCATGCATACAGAATGTCACTGTGGTATGAGCACACAGGAACTGCTGAGGAATTGTTCTTAGAGCCAGAAAGTTTGGCATGTGTGCAGAGAATGAGGTCGATAGCAGATCATATGTGGGAAATGTACAGCAGTGAAGAAATTGTGGACATGGAAGGGGTGCACCTTGTAAGATACCCTGTGAAAATAACTCTAGAAGGGTATGTGGAGGACCTAGATGATGGTGGGGATCTTTTTCCTGATACAAAATCTCCTGTGAGGGGGAAGAGATCAAAATTGTTAACCCCTGTCTTTACCACTTAA 2274 0.4235 MEEMPKFIHGTIEATIFNATPYSPLFPFNCVYTKGKPVHVSIRIGKQKVAKTTQERERVWNQTFQIQCAHSEDSTITITLKTSCFILGKFHMQAKRLKEESLINGLFPLLMENGKPNPQLKLRFMLWFKPAEMEPSWTNILFNGEFQGLRDATFPQRSNCQVKLYHDAHHSSTFHPPFDLCGSPIKLWEDVYKAIEGAKYLIYIAGWSFNPKIVLVRDPETEIPHAREINLGELLKKKAEEGVAVRVMVWDDETSLPFIKNKGVMNTHDEEAFAYFKHTKVICRKCPRLHHKFPTLFAHHQKTITVDTRTPYSVHAREIMSFLGGLDLCGGRYDTEKHSLFQTLAEESEYHDFYQTNIAQASLKRGGPREPWHDAHACVIGEAAWDVLTNFEQRWTKQCDPSLLVPANTLENLIPTYSGTPVGRNWKVQVYRSIDHVSASQLFRRLTVERSIHEAYVEAIRRADRFVYIENQYFVGGCHLWQEDRHSGCSNLIPIEIALKVVSKIKARERFAVYIVIPMWPEGVPESEPVQDILHWTRQTMTMMYRFIGEAIIESGEPGHPRDYLNFFCLANREKKEQEEFLPPLSPHPATQYWNAQKNRRFPIYVHSKMMIVDDIYILIGSANVNQRSMDGQRDTEIAIGAYQFQDGVDHHINHGDIHAYRMSLWYEHTGTAEELFLEPESLACVQRMRSIADHMWEMYSSEEIVDMEGVHLVRYPVKITLEGYVEDLDDGGDLFPDTKSPVRGKRSKLLTPVFTT* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1652 757 SMART pld_4 295 332 IPR001736 GO:0003824
Pvu5g1652 757 SMART pld_4 602 629 IPR001736 GO:0003824
Pvu5g1652 757 Pfam Phospholipase D Active site motif 296 332 IPR001736 GO:0003824
Pvu5g1652 757 Pfam Phospholipase D Active site motif 604 629 IPR001736 GO:0003824
Pvu5g1652 757 Gene3D Endonuclease Chain A 420 647 - -
Pvu5g1652 757 SUPERFAMILY Phospholipase D/nuclease 139 406 - -
Pvu5g1652 757 PIRSF PLD_plant 8 757 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Pvu5g1652 757 Gene3D Endonuclease Chain A 182 415 - -
Pvu5g1652 757 PANTHER PHOSPHOLIPASE D ALPHA 5 757 - -
Pvu5g1652 757 PANTHER PHOSPHOLIPASE D 5 757 IPR015679 -
Pvu5g1652 757 Pfam C2 domain 39 109 IPR000008 -
Pvu5g1652 757 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 295 332 IPR001736 GO:0003824
Pvu5g1652 757 SUPERFAMILY Phospholipase D/nuclease 425 686 - -
Pvu5g1652 757 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 602 629 IPR001736 GO:0003824
Pvu5g1652 757 Pfam Phospholipase D C terminal 674 746 IPR024632 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1652 Pvu-Chr5 38572578 38575654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1652 30 757 Phospholipase D Gene Family (Wang group) AT1G55180 61.808 0.0 950
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1652 K01115 - gmx:100807431 1384.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1652 5 38572578 38575654 Pvu5g1652 5 38572578 38575654 ECH
Pvu5g1652 5 38572578 38575654 Pvu10g1451 10 41186511 41190685 PCT