Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1636 ATGAATGATTCAAGAAGCAGCACACAAGCTTGTGCTGCTTGCAAGTACCAACGAAGGAAGTGCGGATCCAAGTGCATTCTTGCGCCGTTTTTTCCTCATCACCGCGAAAAACAGTTTCTCCTTGCTCACAGGCTCTTCGGAGTTGGAAAAATCACGAACATGATCAAGCCTCTCGATCCTGGTCGCAGAAACATAGCCATGGCCACCATTATCTACGAGTCTGATATGAGAGCCAAGGACCCTGTTGGGGGCTGTTTGAGGATCATTCAAAACTTACAATCTCAGATTGCATATTCTCAAACTGAACTCCAACTTATGCTTCAACACCTTGCCTTCTTCAGACGATCATCACCACCACCCTCCTTCTCATCCCATCCTTCTCCTTTACCATTTCAATTTCAACACCAATTCAAATCGAGAGGTCCATTACAAATTCAAGAAGAGAAAGATCCTTATCATTTATTGCAAGAAGATATAAAGTTGGAGACTGACAATCAGGACGCATGGCGTCGTCGTCGG 519 0.447 MNDSRSSTQACAACKYQRRKCGSKCILAPFFPHHREKQFLLAHRLFGVGKITNMIKPLDPGRRNIAMATIIYESDMRAKDPVGGCLRIIQNLQSQIAYSQTELQLMLQHLAFFRRSSPPPSFSSHPSPLPFQFQHQFKSRGPLQIQEEKDPYHLLQEDIKLETDNQDAWRRRR 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1636 173 PANTHER LOB DOMAIN PROTEIN 5 166 - -
Pvu5g1636 173 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Pvu5g1636 173 Pfam Lateral organ boundaries (LOB) domain 10 105 IPR004883 -
Pvu5g1636 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1636 Pvu-Chr5 38437147 38437665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1636 9 114 AS2 family AT3G13850 60.377 5.60e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu5g1636 LOB 7.2e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1636 5 38437147 38437665 Pvu10g1438 10 41055901 41057959 PCT