Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1634 ATGAGAATTCAAAAGGGTCCAAATATGAGAAAAGACCATGAAGGGTTTGATGCTCCAAAAACCATGTCTAATTTGACTTCTGCATCAGGTGAAGCTAGTGCTTCTTCAGGCAACAGAACTGAAATTGGTTCTGATTACTCACAACAGTACTTTGCTACTCCACCAACTCAAACCGAAACTCCACAAAAGAAAAAGAGAAACCTTCCAGGCAACCCAGACCCGGAGGCTGAGGTTGTCGCGTTGTCTCCAAAGACTCTTTTGGCGACAAATAGGTTCATTTGTGAGATCTGCAGCAAAGGCTTTCAGAGAGATCAGAATCTCCAACTTCACAGAAGAGGGCACAATCTGCCATGGAAATTGAAGCAGAGAACGAGCAAAGAGATAAGGAAGAAGGTTTATGTGTGCCCAGAAGCAACTTGCGTCCACCACGACCCTTCAAGGGCCCTGGGGGACCTAACTGGCATCAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAGTATGCTGTTCAATCAGACTGGAAAGCTCACTCCAAGACCTGTGGCACAAGAGAGTACAGATGTGACTGTGGAACTCTCTTCTCAAGGAGGGACAGTTTCATAACACACAGAGCCTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGATCTGTGACAGGCATAGACATGGGAATAGGCATTCCCAACAACTCAGCTACAACTCCAACAACACCTGCAGCAGGAGTAGTGATATCTTCATCCTCTCATCATCATCATCATCAAGAGATCCATGGTAACAATTTCCCATTGAAGAAAGAGCAAGAAGGTTTCATGCCCCCTTGGCTTCAACAACCACCCTCCACCATTGATCTCTCCTCCTCCTCCTCCTCCTTCTTCTCTCACCATGAAAACCCTAACCCTAGAGGTGGTGGGGGAGGTGGTCCCATTCTCCCTCCCTACCCAACAGCGCCTTCCCCTCCTCACATGTCAGCCACAGCGTTGCTGCAGAAAGCAGCCCAAATGGGAGCTACCATCACCAAAACTGGCTCCATGATTAGGACCCACCAACAACCTCACGTGTCTCCTCACTCTTTCAATTTGTCCTCACGTGACCACCAGATGACCCCCACTTCCAACACCACCACTGGTGTTGGTGTTGGTGTTTCTTCATCACTTCTTCACCATGTTATCAACTCTTTCTCCTCCCCTTTTGAAGGGACTTCTTTCGAGGACCCTTTTCATGGTGCTGTCACGAAAACAAGCGCCGCTGATGACCGTGCCGGTGGTGGTGGCGGCGGTGGCAATTATAATGAGACGATGACCAGAGATTTCTTGGGTCTTCGACCCCTCTCTCACACTGATATTCTCAACATCGCTGGCATGGGAAACTGCATGAACTCCCAACTTAACGAAACCCAAAACCCTTGGCAAGGAAGTTGA 1446 0.4855 MRIQKGPNMRKDHEGFDAPKTMSNLTSASGEASASSGNRTEIGSDYSQQYFATPPTQTETPQKKKRNLPGNPDPEAEVVALSPKTLLATNRFICEICSKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEATCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARSVTGIDMGIGIPNNSATTPTTPAAGVVISSSSHHHHHQEIHGNNFPLKKEQEGFMPPWLQQPPSTIDLSSSSSSFFSHHENPNPRGGGGGGPILPPYPTAPSPPHMSATALLQKAAQMGATITKTGSMIRTHQQPHVSPHSFNLSSRDHQMTPTSNTTTGVGVGVSSSLLHHVINSFSSPFEGTSFEDPFHGAVTKTSAADDRAGGGGGGGNYNETMTRDFLGLRPLSHTDILNIAGMGNCMNSQLNETQNPWQGS* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1634 481 MobiDBLite consensus disorder prediction 314 328 - -
Pvu5g1634 481 SMART c2h2final6 92 114 IPR013087 -
Pvu5g1634 481 SMART c2h2final6 133 163 IPR013087 -
Pvu5g1634 481 SMART c2h2final6 168 188 IPR013087 -
Pvu5g1634 481 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Pvu5g1634 481 Gene3D Classic Zinc Finger 161 226 - -
Pvu5g1634 481 MobiDBLite consensus disorder prediction 1 75 - -
Pvu5g1634 481 MobiDBLite consensus disorder prediction 288 305 - -
Pvu5g1634 481 MobiDBLite consensus disorder prediction 358 379 - -
Pvu5g1634 481 MobiDBLite consensus disorder prediction 1 18 - -
Pvu5g1634 481 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 465 - -
Pvu5g1634 481 SUPERFAMILY beta-beta-alpha zinc fingers 91 188 IPR036236 -
Pvu5g1634 481 MobiDBLite consensus disorder prediction 288 331 - -
Pvu5g1634 481 MobiDBLite consensus disorder prediction 20 65 - -
Pvu5g1634 481 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 24 465 - -
Pvu5g1634 481 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Pvu5g1634 481 Gene3D Classic Zinc Finger 71 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1634 Pvu-Chr5 38414904 38419964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1634 20 473 IDZ Gene Family AT1G55110 50.313 6.07e-129 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu5g1634 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1634 K25870 - gmx:100819692 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1634 5 38414904 38419964 Pvu10g1435 10 41038935 41041294 PCT