Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1629 ATGGATTATTATCCTTCTCAACATCACTTGCAATTCGAATCTGAACCTGGCGTCTACCATGGTGATTTCAATGATGAGCTCGTAAAACCCTCTTCCAATCCTCGTGATCCGTCTTCAGGGAAACTGTTCGTTGGGGGCATTTCGTGGGAGACTTCTCAAGAATCATTTTTTAATTACTTCAGCAAATATGGAGAAGTAACAGATTCAGTGATAATGACAAATAAACTTTCGGGAAGGCCACGTGGATTTGGCTTTGTTACATTTGCCGATTCAGCTGTAGCAGATGAAGTTTTGGCCCAGGAACATACCATTGATGGCAGAGTGGTAGAAGTGAAGAGGACAGTCCCTAGGGAGGACATGGAAGGTATTGGAGTACTAACAACAAAGAAGATATTTGTAGGGGGAATACCCCAACTTTTCAGTGACGATGAGTTGAGGGGATACTTTTTACCTTATGGCAATGTTATTGAGTGCCAAATCATGGTAGATCACAATACTGGGCGATCTAGAGGCTTTGGATTTGTCACTTTTGACAACGAAGATTCAGTCGAAAAGGTTTTTTCAGTGGGAAAAATACATGAAATTGGAGGCAAGCAGGTTGAAATTAAGAGAGCTGAGCCCAAAAGATCTGGAGTTGATCACAGCAGTACCTCACGAAAGTCATATGGTGGTTTTGGCAATGAAATGGATGGATATGGTGGGAATAGTTCTAGAAATCGTAATCATGGAAAAAGAGGTGGACATTATACAGATTCTGGAATGAACGGAGCATATGGCTATTTTGAGGGAAGCTTTGGTGGAAGTGCTGCCACTGTTTATGGTGGTTATTGTGGATATGGTTATGGCTTTGGATATGGTGGGCCAATGTATTGCTATGGCGGATATGGACTCAATTCTTTTGGTAATCCTGGGGTTTATGGTGGTGGCGCTATTCCCCATGTAGATGGTAATGCATATGGAAGAAATGGTAGTTTCAACCGCACCAGTGGCTATGACAGTGGGAAAGGAGCTGAGAAGGACGATGGTCCTACGACTGGAAGGTACCATCCTTACTGGAAATGA 1062 0.4284 MDYYPSQHHLQFESEPGVYHGDFNDELVKPSSNPRDPSSGKLFVGGISWETSQESFFNYFSKYGEVTDSVIMTNKLSGRPRGFGFVTFADSAVADEVLAQEHTIDGRVVEVKRTVPREDMEGIGVLTTKKIFVGGIPQLFSDDELRGYFLPYGNVIECQIMVDHNTGRSRGFGFVTFDNEDSVEKVFSVGKIHEIGGKQVEIKRAEPKRSGVDHSSTSRKSYGGFGNEMDGYGGNSSRNRNHGKRGGHYTDSGMNGAYGYFEGSFGGSAATVYGGYCGYGYGFGYGGPMYCYGGYGLNSFGNPGVYGGGAIPHVDGNAYGRNGSFNRTSGYDSGKGAEKDDGPTTGRYHPYWK* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1629 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
Pvu5g1629 353 SUPERFAMILY RNA-binding domain, RBD 127 235 IPR035979 GO:0003676
Pvu5g1629 353 PANTHER BOULE-RELATED 34 351 IPR037366 GO:0003729
Pvu5g1629 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 116 IPR000504 GO:0003723
Pvu5g1629 353 SUPERFAMILY RNA-binding domain, RBD 32 120 IPR035979 GO:0003676
Pvu5g1629 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 109 IPR000504 GO:0003723
Pvu5g1629 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 199 IPR000504 GO:0003723
Pvu5g1629 353 SMART rrm1_1 41 112 IPR000504 GO:0003723
Pvu5g1629 353 SMART rrm1_1 130 203 IPR000504 GO:0003723
Pvu5g1629 353 Gene3D - 126 260 IPR012677 -
Pvu5g1629 353 MobiDBLite consensus disorder prediction 329 353 - -
Pvu5g1629 353 Gene3D - 39 121 IPR012677 -
Pvu5g1629 353 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 34 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1629 Pvu-Chr5 38372405 38375899 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1629 35 219 Eukaryotic Initiation Factors Gene Family AT1G71770 27.228 2.18e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1629 K12741 - gmx:100818080 575.089