Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1625 ATGGGTGCTTCGGGAAAGTGGTTCAAGTCACTCATTCCTTTTCGGAAGACCTCAACTTCAACAACTGATCAAGAGAAGGGTGGTGAAAACAAGAGCAAGAAGAAATGGAAGCTATGGAGAGCTTCTTCAGAAGGGTCCAACGTGAAGAAAGTTGGTGATGCTGCTGTACCTGATTCTTCCTTTACTTATGCGGTGGCTGTGATGGTTCCCAAAGATTTCAAGCTCATCAAGCAGGAATGGGCTGCCATCCGCATTCAGGCTGTGTTTCGAGCCTTCTTGGCTAGACGAGCTTTGAGGGCCCTGAGGGCAGTGGTAAGGCTGCAAGCTATTTTTCGAGGCAGGCTAGTCAGAAAGCAAGCAGCTGTCACTCTGAGGTGTATGCAGGCTCTTCTTAGAGTTCAGGCGCATGTGAGGGCAAGGAATGTGAGGAATTCTCCAGAAGGGAAAGCAGTGCAGAAATTACTTGATGAATATCGCAACCTAGCTGATCCTTCCAAGGAAATTGAGCAAGGATGGTGTGATATTCCTGGAACCATGGATGAAGTTAAAGCAAAGCTACGAATGAGGCAAGAAGGAGCTGTGAAGAGGGATAGAGCAATGGCATACTCTCTCTCCACACAGTCAAGACTGGTCGCCAGTCCAAATCCTAAAGCCACCACAAAGGCGTTGACTCCTCTCAAGCATCACAATCTAAACAATAAGAGCTTAGGATGTAGCTTGTTAGAACGCTGGATGGAGACCAAGCCTTGGGAGAGTCCAATCTACAAGAAGAGTGAAGACCTTGTTCCTGTTTTTCAATCAAGAAAGAATGGTGTGACATCCAGGATTTCAGCACTTAAACCTCCAATAACCAGCCAATCCACTCCATCATCTTCGGCCATAAGCTCTGAATGCATGTGTGATGATGTGTCAACTTCTTATACAGCTGGATCTCCATCTTTTCCATCCACCAATACTGTTTTAATGGAAGCAACAGAGGAAAGAGATGTTCATCAACCAAGCTACATGAATTTGACAGAATCAACCAGGGCTAAACTGAAAACTTGCAGGAGTTCTTCACATAATTCAAAGAGTCTTGTAATGGAGGAGTGTGTGTCTCACAGCACAACCTCAGGTTTGATAAATGGAGATTCTAGAAGCAGTTCTAATTCTGACCCTTCAGTTAACTTATGGAAGGATTCTTGTGCAACCCCTCTGAGGGCAAGTTACCAAAAACGACAAATTGGGGTATGA 1233 0.4517 MGASGKWFKSLIPFRKTSTSTTDQEKGGENKSKKKWKLWRASSEGSNVKKVGDAAVPDSSFTYAVAVMVPKDFKLIKQEWAAIRIQAVFRAFLARRALRALRAVVRLQAIFRGRLVRKQAAVTLRCMQALLRVQAHVRARNVRNSPEGKAVQKLLDEYRNLADPSKEIEQGWCDIPGTMDEVKAKLRMRQEGAVKRDRAMAYSLSTQSRLVASPNPKATTKALTPLKHHNLNNKSLGCSLLERWMETKPWESPIYKKSEDLVPVFQSRKNGVTSRISALKPPITSQSTPSSSAISSECMCDDVSTSYTAGSPSFPSTNTVLMEATEERDVHQPSYMNLTESTRAKLKTCRSSSHNSKSLVMEECVSHSTTSGLINGDSRSSSNSDPSVNLWKDSCATPLRASYQKRQIGV* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1625 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 120 IPR027417 -
Pvu5g1625 410 ProSiteProfiles IQ motif profile. 78 106 IPR000048 GO:0005515
Pvu5g1625 410 MobiDBLite consensus disorder prediction 17 37 - -
Pvu5g1625 410 Gene3D - 78 120 - -
Pvu5g1625 410 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 406 - -
Pvu5g1625 410 PANTHER IQ-DOMAIN 5-RELATED 1 406 - -
Pvu5g1625 410 ProSiteProfiles IQ motif profile. 102 129 IPR000048 GO:0005515
Pvu5g1625 410 MobiDBLite consensus disorder prediction 370 389 - -
Pvu5g1625 410 SMART iq_5 77 99 IPR000048 GO:0005515
Pvu5g1625 410 SMART iq_5 100 121 IPR000048 GO:0005515
Pvu5g1625 410 Pfam IQ calmodulin-binding motif 80 99 IPR000048 GO:0005515
Pvu5g1625 410 Pfam IQ calmodulin-binding motif 102 119 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1625 Pvu-Chr5 38349236 38351690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1625 1 390 IQD Protein Family AT2G26180 44.712 3.16e-87 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1625 - - gmx:100788715 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1625 5 38349236 38351690 Pvu10g1427 10 40967277 40970081 PCT