Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1624 ATGGGGCATCACTCTTGCTGCAACAAGCAGAAGGTCAAAAGGGGACTGTGGTCACCTGAAGAAGATGAAAAACTCATCAACTACATCACAACTTATGGACACGGTTGCTGGAGTTCAGTCCCAAAGCTTGCAGGTCTGCAGAGGTGTGGAAAGAGCTGCAGATTGAGATGGATAAATTATCTGAGACCTGATTTGAAACGGGGAAGCTTTTCTCCTCAAGAAGCAGCACTCATTATAGAACTTCATAGTATTCTTGGCAACAGGTGGGCTCAGATAGCCAAGCACCTACCTGGAAGAACAGATAATGAGGTGAAGAACTTTTGGAATTCAAGCATAAAGAAGAAGCTGCTTTCTCATGATGTTGTTCCTTCTTTAGCCACATTTTCTGATATTCACACTCTTGCCAATGCTTCCATGGAAAGTTTCTTCCCTTTAACTGACAACAACACTATCCTAAACTCCCATCATCAATACCTTCCCATCATCCCAGCCCCAATCCTACAAGCCTTTGATCATCTCAACAATGATATCAAGATTCACATAAACAACAACTATAATAATAATAATGCCAACAATTTCCTTCATTTTCAGAATCCAATGCCAGAAACAGTGCCACCATCCAACAACATCATTCCATCTTTGTATGAATTAGATACATGGTCCTCCTTGGGGTGTGAACCCATTCATCTTGATCCAAATCAAGAAACTCAAACAATCATCACCAAGAGTGATACCATCGTTGAGAAATTCATCAATCCAACTACATGGAGCATCGAGGATTATGTCTGCAGCATCCCATTTTCTTCTTCTGCCAATTCACTACACAGACATGAGGATGCTGTTGCGTGTTACACACCAGGCATTCGTGCACAAGATCAAATTGTTGTACCCAATCAAGTGGAGTACATTGATGCCATCATCATGTCGTCAACATCATCTTCATCAATATCACTCTATCAAGCAGAAAAATAG 972 0.4115 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDVVPSLATFSDIHTLANASMESFFPLTDNNTILNSHHQYLPIIPAPILQAFDHLNNDIKIHINNNYNNNNANNFLHFQNPMPETVPPSNNIIPSLYELDTWSSLGCEPIHLDPNQETQTIITKSDTIVEKFINPTTWSIEDYVCSIPFSSSANSLHRHEDAVACYTPGIRAQDQIVVPNQVEYIDAIIMSSTSSSSISLYQAEK* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1624 323 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu5g1624 323 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pvu5g1624 323 CDD SANT 17 61 IPR001005 -
Pvu5g1624 323 SMART sant 66 114 IPR001005 -
Pvu5g1624 323 SMART sant 13 63 IPR001005 -
Pvu5g1624 323 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu5g1624 323 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Pvu5g1624 323 Gene3D - 69 116 - -
Pvu5g1624 323 PANTHER MYB DOMAIN PROTEIN 55 2 210 - -
Pvu5g1624 323 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu5g1624 323 PANTHER TRANSCRIPTION FACTOR MYB26 2 210 - -
Pvu5g1624 323 Gene3D - 11 67 - -
Pvu5g1624 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pvu5g1624 323 CDD SANT 69 109 IPR001005 -
Pvu5g1624 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1624 Pvu-Chr5 38337097 38339199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1624 1 118 MYB Transcription Factor Family AT3G13890 96.610 4.68e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu5g1624 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1624 K09422 - gmx:102662609 497.278