Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1612 ATGGATTCAAGTGCAGGAGAAGAAGAATCCACCTTCATCGCCGTTGATAGTGATCGGAACAGCCAACACGCAGTCAAATGGGCTGTGGAACATCTCTTGAAGAATAATTCTCCTTGCACACTCGTTCATGTCATAACTAAGAACTTATATCACAATGATTTAGAGGTTTTCCCCAAGCAGGGTTGCCCACCAACAGAAGAAGAATTGAACCAGTTTTTTCTTTCCTTTCGAGGAATTTGTGCTCGAAAAGGGGTCGTAGTTAAAGAGTTAGTTCTGCATGACATTGATGTAGCAAATGCACTTACTAATTACATAATTCACAACTCTATCAGCAATGTTGTTGTTGGTGCTTCTCGCTCCAATGCTCTTATAAGGAAATTTAAAGATGTAGATGTGCCAACTAGCTTGGTAAGGTCTGTGCCACAATCTTGCATGGTGCACATCATATCAAAAAGAAAAGTGCAGAATATTAGACCTCATTCACAAAATATTAGTATTGTTCCATCAAAATCTCTAAAAAGCATTAGGGAAGGTTTTCGATCCAAAGACTTAAACAGGTTCATGCATGAAGAAGAAGATAAGAATGAAATCGCACACAACAAAGTGCTATTTAAAAGATACAATATTAAAGAAATTGAAGTAGCAACTAATTACTTTGACAATGCCCTCAAAATTGGTGAAGGTGCATATGGACCTGTTTTCAAAGGGATGCTTGATCACATTGATGTTGCTGTTAAGGCCCTGAGACCTGACATAACCCAAGGGGAGAAGCAGTTTCAACAAGAGGTTAATGTTTTGAGCACAATAGAACATTCAAACATGGTTAAACTTTTAGGTGCATGTCCAGAGTATGGATGCCTTGTGTATGAGTACATGGAAAATGGAAGTTTAGAAGATCGTCTCTTCCAAAAAGATAACACACCAACAATCCAATGGAAAGTTAGATTCAAAATAGCATCTGAAATTGCCACAGGCCTCCTTTTCCTTCATCAGACAAAGCCTGAGCCAATTGTGCATCGTGACCTCAAACCAGCAAATATTTTGTTGGACTGTAACTATGCTAGCAAGATCACTGATGTGGGTTTGGCAAGACTAGTTCCCCCTAGAGTAGCTAACAAAAGCACTCAATACCATAAGACAACTGCAGCTGGTACACTTTGCTACATTGATCCAGAGTATCAACAAACAGGACTATTGGGTGTTAAATCAGACATATATTCACTAGGTGTGATGTTATTGCAAATTATAACAGGAAAGCCTCCTATGGGTGTGGCTCACTTAGTTCAAGAGGCCATAGACAAAGGTAGATTTTCAGAGGTTCTTGATCCAAATGTCACTGATTGGCCTGTTGAGGAAACTTTATCATTTGCTAAGTTGGCTTTAAAGTGTTGTGAGATGAGAAAACGAGATAGACCAGAACTTGATTCTGTCATTTTGCCAGAGTTAAATCGGCTTCGAAATTTAGGTGAAGTAGTCATCAACAATTAA 1488 0.3884 MDSSAGEEESTFIAVDSDRNSQHAVKWAVEHLLKNNSPCTLVHVITKNLYHNDLEVFPKQGCPPTEEELNQFFLSFRGICARKGVVVKELVLHDIDVANALTNYIIHNSISNVVVGASRSNALIRKFKDVDVPTSLVRSVPQSCMVHIISKRKVQNIRPHSQNISIVPSKSLKSIREGFRSKDLNRFMHEEEDKNEIAHNKVLFKRYNIKEIEVATNYFDNALKIGEGAYGPVFKGMLDHIDVAVKALRPDITQGEKQFQQEVNVLSTIEHSNMVKLLGACPEYGCLVYEYMENGSLEDRLFQKDNTPTIQWKVRFKIASEIATGLLFLHQTKPEPIVHRDLKPANILLDCNYASKITDVGLARLVPPRVANKSTQYHKTTAAGTLCYIDPEYQQTGLLGVKSDIYSLGVMLLQIITGKPPMGVAHLVQEAIDKGRFSEVLDPNVTDWPVEETLSFAKLALKCCEMRKRDRPELDSVILPELNRLRNLGEVVINN* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1612 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 337 349 IPR008271 GO:0004672|GO:0006468
Pvu5g1612 495 Gene3D Transferase(Phosphotransferase) domain 1 292 491 - -
Pvu5g1612 495 SMART serkin_6 219 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1612 495 Gene3D Phosphorylase Kinase; domain 1 187 291 - -
Pvu5g1612 495 Pfam Protein kinase domain 223 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1612 495 ProSiteProfiles Protein kinase domain profile. 219 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1612 495 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 13 127 - -
Pvu5g1612 495 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 180 489 - -
Pvu5g1612 495 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 10 167 - -
Pvu5g1612 495 CDD STK_N 10 151 - -
Pvu5g1612 495 SUPERFAMILY Protein kinase-like (PK-like) 202 477 IPR011009 -
Pvu5g1612 495 Pfam Universal stress protein family 13 146 IPR006016 -
Pvu5g1612 495 Gene3D HUPs 11 149 IPR014729 -
Pvu5g1612 495 PANTHER OS02G0152300 PROTEIN 10 167 - -
Pvu5g1612 495 PANTHER OS02G0152300 PROTEIN 180 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1612 Pvu-Chr5 38241516 38244197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1612 177 490 Receptor kinase-like Gene Family AT5G12000 66.458 4.67e-152 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pvu5g1612 Pkinase 3.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1612 - - pvu:PHAVU_005G156500g 993.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1395 10 40623269 40627644 Pvu5g1612 5 38241516 38244197 PCT