Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1609 ATGGAAGCGCGAAGTCGCTCCGTCGAAGACATATTCGAGGATTTCAAGGGCCGAAGAGCAGGCATCATCAAAGCCCTCACCGCCGATGTTGAAGATTTCTACAGCCAATGTGATCCTGAGAAGGAGAATTTGTGCTTATATGGATTACCCAGTGAGCAGTGGGAAGTAAATTTACCTGTTGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTCCTAGGCATTAACTTTGCTAGGGATGGCATGCAGGAAAAAGACTGGCTATCGTTAGTTGCTGTTCATAGTGATACATGGTTGCTTGCCCTTGCCTTTTATTTTGGAGCCAGATTTGGATTTGATAAAACTGACAGGAAACGACTATTCAGTATGATCAATGAACTACCGACAATATTTGAAGTTGTTGCTGGTGGTGGAGCAAAGAAGCCACTTAAAGAGAAGTCATCAGTTTCAAACAACAGTGGAAACAAATCTAAGTCTATCACTAAAGTGAGGGTTTCTGAAACCCAGGGAAGACTGTCAAAGACATTGTTACAACAACCAAAGGATGAGGAAGAAGTAGTAGAAGAGCAAGAGCAAGAGCAGGAGCAAGATGATGAAGATGAACATGGAGAGACCTTGTGTGGGGCATGTGGTGAGAATTATGGTACTGATGAGTTCTGGATTTGCTGTGACATATGCGAGAAGTGGTTCCATGGGAAATGCGTGAAGATCACCCCTGCCAGGGCAGAGCACATCAAGCAATACAAGTGTCCATCCTGCAGTAACAAGAGAGCTCGCTAA 777 0.4466 MEARSRSVEDIFEDFKGRRAGIIKALTADVEDFYSQCDPEKENLCLYGLPSEQWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLALAFYFGARFGFDKTDRKRLFSMINELPTIFEVVAGGGAKKPLKEKSSVSNNSGNKSKSITKVRVSETQGRLSKTLLQQPKDEEEVVEEQEQEQEQDDEDEHGETLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRAR* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1609 258 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 1 258 - -
Pvu5g1609 258 ProSiteProfiles Zinc finger PHD-type profile. 203 255 IPR019787 -
Pvu5g1609 258 MobiDBLite consensus disorder prediction 144 175 - -
Pvu5g1609 258 MobiDBLite consensus disorder prediction 140 201 - -
Pvu5g1609 258 ProSitePatterns Zinc finger PHD-type signature. 206 252 IPR019786 -
Pvu5g1609 258 SMART PHD_3 205 253 IPR001965 -
Pvu5g1609 258 Pfam Alfin 7 134 IPR021998 GO:0006355|GO:0042393
Pvu5g1609 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 254 IPR013083 -
Pvu5g1609 258 SUPERFAMILY FYVE/PHD zinc finger 195 256 IPR011011 -
Pvu5g1609 258 Pfam PHD-finger 206 255 IPR019787 -
Pvu5g1609 258 PANTHER CPG BINDING PROTEIN 1 258 IPR045104 GO:0006355|GO:0042393
Pvu5g1609 258 MobiDBLite consensus disorder prediction 183 201 - -
Pvu5g1609 258 CDD PHD_AL_plant 205 255 IPR044104 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1609 Pvu-Chr5 38224578 38229423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1609 6 258 Alfin-like Transcription Factor Family AT3G42790 69.960 1.50e-117 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pvu5g1609 Alfin 9.8e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1609 - - gmx:100170696 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1387 10 40524082 40528108 Pvu5g1609 5 38224578 38229423 ECH
Pvu9g0827 9 12945490 12948309 Pvu5g1609 5 38224578 38229423 ECH
Pvu5g1609 5 38224578 38229423 Pvu5g1609 5 38224578 38229423 ECH
Pvu5g1609 5 38224578 38229423 Pvu10g1387 10 40524082 40528108 PCT