Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1608 ATGAATTGCTTGTGTGAGAAAGACTGTGGTCTATTTTCTTCTCATTCAACATCACCCAATGTTCTTGGATGCCCATCATGGGGGCCTTCAGAATCCAGAAGTTTGAGCTTAAAAGTGGATGCTCAGCCACAACAATGCCACAGGACCAAAACATTGAGCTTTCAATTCCAAGAACTGGATTCATCTTCGACTCATTCGGGTCAATCTTCTACCAAACTTGGTTCATCACAATCCGGTCAAATGTCTGTTGAGCATAGCTCTACAGATTCAACACATGGCATCAGATCATTTATGGGGAATCAGGATTTCACCTTCCCTCCTCCACTACTGGATCACAGCCAAACACTTGCTCATATTGCAGGTCACTATGCTGATCCAGGCTATAGCAGCCTAATGGCTTCTTCATATGGTTCACAGTTTAAGCATGAAGACCAAAAAAACACTGATGAGATTCCTAATGTCCAGCCAGTGGAAACTGCTCCTATTCGAATTCCTCTGCAATTGGACATTACAGAAGAACCCATATACGTGAATTCAAAGCAGTACCATGCTATTCTGAGGAGAAGACAGAATCGAGCAAAACTTGAAGTACAAAACAAACCCATCAAGGATCGGAAACCTTATCTTCACGAGTCCCGCCACCTGCATGCACTGAAGAGAGCAAGAGGTGCTGGTGGACGCTTTCTCAACACCAAAAAGCTTCAACAATCAACTCGTACACGTGGAAATACTGCAGAATCTAGCATGCATCAAATGAAAAACTACAGAGATGGTGATGACAATGCCACATATGCTTCCAACAGTGATGCAAGAAACATGCAGAATCATACATCTGATAAGGGTGGTGGCACCACTCAGCAGCACCCTCTATTTGTCTACATGTGA 885 0.435 MNCLCEKDCGLFSSHSTSPNVLGCPSWGPSESRSLSLKVDAQPQQCHRTKTLSFQFQELDSSSTHSGQSSTKLGSSQSGQMSVEHSSTDSTHGIRSFMGNQDFTFPPPLLDHSQTLAHIAGHYADPGYSSLMASSYGSQFKHEDQKNTDEIPNVQPVETAPIRIPLQLDITEEPIYVNSKQYHAILRRRQNRAKLEVQNKPIKDRKPYLHESRHLHALKRARGAGGRFLNTKKLQQSTRTRGNTAESSMHQMKNYRDGDDNATYASNSDARNMQNHTSDKGGGTTQQHPLFVYM* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1608 294 ProSiteProfiles NF-YA/HAP2 family profile. 171 231 IPR001289 GO:0003700|GO:0006355
Pvu5g1608 294 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 48 281 IPR001289 GO:0003700|GO:0006355
Pvu5g1608 294 Gene3D - 171 232 - -
Pvu5g1608 294 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 173 228 IPR001289 GO:0003700|GO:0006355
Pvu5g1608 294 ProSitePatterns NF-YA/HAP2 subunit signature. 176 196 IPR018362 GO:0003677|GO:0016602
Pvu5g1608 294 MobiDBLite consensus disorder prediction 260 285 - -
Pvu5g1608 294 MobiDBLite consensus disorder prediction 58 98 - -
Pvu5g1608 294 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700|GO:0006355
Pvu5g1608 294 PRINTS CCAAT-binding transcription factor subunit B signature 205 228 IPR001289 GO:0003700|GO:0006355
Pvu5g1608 294 SMART cbf3 170 231 IPR001289 GO:0003700|GO:0006355
Pvu5g1608 294 PANTHER HAP2 SUBUNIT OF HAP COMPLEX 48 281 - -
Pvu5g1608 294 MobiDBLite consensus disorder prediction 234 251 - -
Pvu5g1608 294 MobiDBLite consensus disorder prediction 234 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1608 Pvu-Chr5 38220036 38222927 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1608 14 277 CCAAT-HAP2 Transcription Factor Family AT1G17590 39.456 1.61e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pvu5g1608 CBFB_NFYA 3.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1608 K08064 - gmx:100803893 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1608 5 38220036 38222927 Pvu5g1608 5 38220036 38222927 ECH
Pvu5g1608 5 38220036 38222927 Pvu10g1386 10 40514377 40518943 PCT
Pvu11g0480 11 4064452 4066197 Pvu5g1608 5 38220036 38222927 PCT