Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1598 ATGGAGTACCCTTTTTCCTCCAAGGGAAGAGAGATTGGGGATTGGCAATCTTCCGGAACTCAGTTGGTGGGATCAACATCGTTAGATGCCAGAATGAGCAATTCAATATCAGAGGATATGTCCAATAGCTTCTCAGAGCTCATGAGCTTTGATACTTATGCTGGTTTATGCAACAGCCCATCCATATCTGATCAGATTTTGGCTAATGAGCTTCCGTCATTTGCTTCATTATCATATTCATTGCCTGATGGATTCAATATAGTCCAACAGAACAATGGGCAATGCTATATGTCAGAAGTTGGCAGAAATAACAATGATATGGAAAGCTCTCCCATTTATGGGGAGAAAGTTGCGTGTCAGCAAATGGACACCCTACTTGGTTTCTTAAGTGATGCAAATGAAGCAAATAACTTGAATTCTAAGCTAAAGGTTAATGGCTCTCCTCAACATCTTAATAACTCTGTCGCAGGTAATTATATAATGTCCAGGCCACCTGCTTTGTCACTCGATGAGAGAATGCTGAGGGCTTTGTCCTTCTTTAAGGAATCAGCTGGAGGGGGAATATTGGCACAAGTTTGGGTGCCCATTAAGGATGGTGATCAATTAATCTTAAGCACGAGTGAACAACCTTATTTGCTAGATCAAATGCTTGCAGGATATCGTGAAGTGTCCAGGACATTTACATTTTCTGCAGAAGGAAAATCTGATTGTTTCCTAGGACTTCCTGGTCGTGTGTTTACCTCCAAAGTTCATGAGTGGACGTCAAATGTTGGTTATTACAGTATGAATGAGTATTTAAGGTTTGAGCATGCAGTTAATCACCATGTTCGTGGATCAATCGCATTTCCCATATTTGACGTGCACTCAGAATTGTCATGTTGTGCTGTACTGGAAATTGTCACTACAAAGGAAAAGCCAGATTTCAGCAGAGAATTTGAAATTGTTTGCCGTGCACTCCAGCTTGTAAATTTAAGGACTGTCAAGCCTCTTCGATGTCTTCCCCAGTGTCTTTCAAACAACAAAAAGGCTACTTTGACTGAGATAGTTGATGTGTTACGATCTGTCTGTCATGCCCATAGATTACCACTGGCACTGACATGGCTTCCCTGTTGTTACACTGAGGGATCAAGAGGTGAAGCTACAAGGATAATTAAAGGGGGTCATTCAACTAATAGTGGAAAAAGCATACTCTGCATTGAAGAATCTGCTTGCTATATAACTGATAGAGCACTGGAAGGATTTGTTCGTGCATGCACAGAACATCCTCTTGAGGAAGGGAAAGGCATAGCTGGGAAGGCTCTTCGATCAAATCATCCTTTCTTTTGTCCTGATGTGAAGACATACGATGTTAGTGAATATCCACTTGTCCACCATGCACGCAAGTATAATTTGAATGCTGCAGTTGCAATTAGGCTAAGGAGTACTTATACTAATAATGATGATTACATATTGGAATTCTTTCTGCCTGTTAATATGAAAGGGGGTTCAGAGCAGCAACTTTTATTAGACAACCTCTCAGGTACCATGCAGAGAATTTGTAGTAGTTTGAGAACAGTTTCAGATATCGAATTATCAAGAATAGAAAGTTCACAAGAAGGGTTTGGAAAGAAAAATGCCCCCTGTTTTTCTCCTTTGTCAAGTCGAAACTCTGAAGTACCATTAGAAAATGGTGACTGTCATTCTGTCCCAATGATGTCATTGAAGGCAACTAACGCAAGAGACAACGAAATTGAGCCTTCTACTCACCAGGGAAGAAATGGAACAAAAAGACAGGTCCAGAAAAATAGAAGTACTTCAGAGAAGAGTGTTAGCTTGAGTGTTCTCCAACAGTACTTTTCGGGTAGTCTGAAGGATGCTGCAAAAAACATCGGTGTTTGCCCAACAACTCTGAAAAGGATATGCAGGCAACATGGAATTTCAAGGTGGCCATCCCGCAAGATTAATAAAGTGAATCGATCACTGAAGAAGATACAGACTGTGCTCGACTCTGTCCAAGGAGTGGAAGGAGGGTTGAAGTTTGATCCCTCTATGGGGGCATTCGTGGCAGGAGGGTCAACCATCCAGGAAACTGATGCACATAAAAGTCTTCTGTTTCCTGAGAAAAGTATTGTAAAAGACGCCACACCTATTACACAAAAATCAGTCTCAGTACCACCTGCACCTTGTAGTGAAGTTGAGAATTTTGCATTTAAGTTGGACGAAAAGTTGAAGAAAACCAATGCGTTTTCCGTTGGTTGTAGTGAAGATTCAAAATCAATGGCAATTGATGATGGGTCATGCAAAATGGAAAGACTTTGCATCAAGGTGCAGGATTGTCCTGAACAAGCTTGTTTGGGTTCTGTTTTTCCAAAAGAACAGGATAAATGGATTCTGAACAAGAGTGGTTTGGGAGTAGAAAATTTTAAAAGCAGTATTCGTGGCCAGAGTTCAAATTCCTTGTTTGGCAATCAGATGCACATTGGTGTAGATGGAGATGCTGGGGTTATTGAACCTAACCACCCTAGTTCCTCAAGCTTGACAGACTCATCTAATGGCTCTGGTTCAATGATGCATAGCATTTCGTCAGGTTCTCAGAGCTTCAAGAACCAGAATCAGTCCAATGTTAAGTCAACCATCGTTGACAGTGGGTCAAAACTAATTGTCAAAGCTATCTATAGAGAAGACACCATTCGTTTCAAGTTTGATCGATCTGCTGGTTGTTTCAGCTTATATGAAGAAGTTGCAGCAAGATTCAAACTACAAACTGGATCATTCCAGCTAAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGTGAATGATGCCGATTTGCAAGAGTGTCTAGAAATATTGGATGATATTGGTACATGCAACGTCAGGTTTCTTGTTCGTGATTTACCTCTCATTTTAAGCAGTTCTGGCAGTAGCAATTGCTACTTGGGAGGCAGCTCATAG 2937 0.4096 MEYPFSSKGREIGDWQSSGTQLVGSTSLDARMSNSISEDMSNSFSELMSFDTYAGLCNSPSISDQILANELPSFASLSYSLPDGFNIVQQNNGQCYMSEVGRNNNDMESSPIYGEKVACQQMDTLLGFLSDANEANNLNSKLKVNGSPQHLNNSVAGNYIMSRPPALSLDERMLRALSFFKESAGGGILAQVWVPIKDGDQLILSTSEQPYLLDQMLAGYREVSRTFTFSAEGKSDCFLGLPGRVFTSKVHEWTSNVGYYSMNEYLRFEHAVNHHVRGSIAFPIFDVHSELSCCAVLEIVTTKEKPDFSREFEIVCRALQLVNLRTVKPLRCLPQCLSNNKKATLTEIVDVLRSVCHAHRLPLALTWLPCCYTEGSRGEATRIIKGGHSTNSGKSILCIEESACYITDRALEGFVRACTEHPLEEGKGIAGKALRSNHPFFCPDVKTYDVSEYPLVHHARKYNLNAAVAIRLRSTYTNNDDYILEFFLPVNMKGGSEQQLLLDNLSGTMQRICSSLRTVSDIELSRIESSQEGFGKKNAPCFSPLSSRNSEVPLENGDCHSVPMMSLKATNARDNEIEPSTHQGRNGTKRQVQKNRSTSEKSVSLSVLQQYFSGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPSMGAFVAGGSTIQETDAHKSLLFPEKSIVKDATPITQKSVSVPPAPCSEVENFAFKLDEKLKKTNAFSVGCSEDSKSMAIDDGSCKMERLCIKVQDCPEQACLGSVFPKEQDKWILNKSGLGVENFKSSIRGQSSNSLFGNQMHIGVDGDAGVIEPNHPSSSSLTDSSNGSGSMMHSISSGSQSFKNQNQSNVKSTIVDSGSKLIVKAIYREDTIRFKFDRSAGCFSLYEEVAARFKLQTGSFQLKYLDDEEEWVMLVNDADLQECLEILDDIGTCNVRFLVRDLPLILSSSGSSNCYLGGSS* 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1598 978 MobiDBLite consensus disorder prediction 575 601 - -
Pvu5g1598 978 Pfam RWP-RK domain 603 650 IPR003035 -
Pvu5g1598 978 ProSiteProfiles PB1 domain profile. 878 958 IPR000270 GO:0005515
Pvu5g1598 978 SMART PB1_new 878 960 IPR000270 GO:0005515
Pvu5g1598 978 ProSiteProfiles RWP-RK domain profile. 584 670 IPR003035 -
Pvu5g1598 978 MobiDBLite consensus disorder prediction 831 862 - -
Pvu5g1598 978 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 6 974 - -
Pvu5g1598 978 Pfam PB1 domain 881 959 IPR000270 GO:0005515
Pvu5g1598 978 PANTHER PROTEIN NLP8 6 974 IPR045012 GO:0003700
Pvu5g1598 978 SUPERFAMILY CAD & PB1 domains 873 960 - -
Pvu5g1598 978 Gene3D - 875 957 - -
Pvu5g1598 978 MobiDBLite consensus disorder prediction 1 21 - -
Pvu5g1598 978 MobiDBLite consensus disorder prediction 826 862 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1598 Pvu-Chr5 38167840 38178215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1598 1 975 NLP Transcription Factor Family AT2G43500 49.341 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pvu5g1598 PB1 2.3e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1598 - - gmx:100804426 1573.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1598 5 38167840 38178215 Pvu5g1598 5 38167840 38178215 ECH
Pvu5g1598 5 38167840 38178215 Pvu11g0534 11 4430033 4435886 PCT