Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1592 ATGCACTTAACTCCTTACACCACCACCACCACTCCAAAGAAGCCATCACCACAATCCAACCACCACCACCATAATAACAACATTCTTCATGAACCACCGCCATTAGATAACAACAACAACACCACCATGCATCGCAGCAACCAGAGCCACACTTCCACCAGCCGTTCTTCCGACTCCACCGAGCCCAACGATGATGGAAAATGGGCACCCAAGCTTCTCAGAGAGTGTGCAAAAGCAATATCAGACCGAGACTCCACCAAAACGCACCACCTTCTCTGGATGCTCAACGAGCTCGCTTCCCCCTACGGCGACTGCGATCAGAAACTCGCCTCTTACTTCCTCCAAGCCTTGTTCTGCAGAGCCACCGACTCCGGCCAGAGATGCTACAAGACGCTCTCCTCCGTCGCCGAGAAGAGTCACTCCTTCGACTCCGCCAGGAGGTTGATTCTCAAGTTCCAGGAGGTCAGCCCGTGGACCACGTTCGGACACGTGGCCTCCAACGGCGCCATCCTGGAGGCCTTGGAGGGAGAGCCCAAGCTCCACATCATCGATCTCAGCAACACGCTTTGCACGCAGTGGCCTACTCTGCTGGAAGCGTTGGCCACGCGGAACGACGAGACGCCGCACCTCAAACTCACCGTGGTGGCGCTGGCGGGGTCGGTGATGAAGGAGGTCGGCCAACGGATGGAGAAGTTCGCGAGGCTCATGGGCGTGCCGTTTGAATTCAACGTGATAAGCGGCTTCAGGGATCTCACGAAAGAAGGGTTGGGGGTTCAGGAAGACGAAGCGATCGCCGTGAATTGCGTGGGGGCGTTGAGAAGAGTGGAGGTTGAAGAGAGGGAGAACTTGATTCGCGTGTTCAAGTCGCTCGGTCCGAAAGTGGTGACCGTTGTTGAGGAAGAAGCTGATTTCTGCAGCTGGAGGGAGGATTTGGTGAAGTGCTTGGAGGAGTGTCTGAGGTTCTACTCTCTGTACTTCGAGATGCTGGAGGAGAGTTTTCCGGCGACGAGCAACGAGAGGTTGATGTTGGAGAGGGAGTGTTCGAGGAGCATAGTTAGGGTTTTGGCGTGCTGTGATGATTTGGAAGATGATGGTGGAGAGTGTTGTGAGAGGAGGGAGAGAGGAACGCAGTGGTGTGAGAGGCTGAGGAATGCGTTTTCGCCGGTGGGATTCAGCGATGATGTGGTGGATGATGTGAAAGCATTGCTGAAGAGGTACCAACCAGGGTGGTCACTGGTGGTGTCTCAGGGTGATGATCATCTCTCAGGGATTTACTTGACATGGAAGGAGGAACCAGTGGTTTGGGCTTCAGCATGGAAACCCTAG 1326 0.549 MHLTPYTTTTTPKKPSPQSNHHHHNNNILHEPPPLDNNNNTTMHRSNQSHTSTSRSSDSTEPNDDGKWAPKLLRECAKAISDRDSTKTHHLLWMLNELASPYGDCDQKLASYFLQALFCRATDSGQRCYKTLSSVAEKSHSFDSARRLILKFQEVSPWTTFGHVASNGAILEALEGEPKLHIIDLSNTLCTQWPTLLEALATRNDETPHLKLTVVALAGSVMKEVGQRMEKFARLMGVPFEFNVISGFRDLTKEGLGVQEDEAIAVNCVGALRRVEVEERENLIRVFKSLGPKVVTVVEEEADFCSWREDLVKCLEECLRFYSLYFEMLEESFPATSNERLMLERECSRSIVRVLACCDDLEDDGGECCERRERGTQWCERLRNAFSPVGFSDDVVDDVKALLKRYQPGWSLVVSQGDDHLSGIYLTWKEEPVVWASAWKP* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1592 441 Pfam GRAS domain family 71 440 IPR005202 -
Pvu5g1592 441 MobiDBLite consensus disorder prediction 1 68 - -
Pvu5g1592 441 MobiDBLite consensus disorder prediction 1 16 - -
Pvu5g1592 441 ProSiteProfiles GRAS family profile. 60 440 IPR005202 -
Pvu5g1592 441 MobiDBLite consensus disorder prediction 31 59 - -
Pvu5g1592 441 PANTHER PROTEIN SHORT-ROOT-LIKE 40 440 - -
Pvu5g1592 441 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 40 440 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1592 Pvu-Chr5 38105503 38107051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1592 44 441 GRAS Transcription Factor Family AT4G37650 51.659 1.76e-144 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pvu5g1592 GRAS 3.6e-94 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1592 - - gmx:100818806 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1346 10 39948943 39951082 Pvu5g1592 5 38105503 38107051 PCT