Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1587 ATGCCGCCTCCTACAAAATCCCTCGAAAGCGAGGACTGGGGAACCCCAACCAACAACCTCTGGGTCGGAAATCTGCCGCCGGAGGTCACCGATTCCGATCTCATGGAACTCTTCGCTCCCTACGGTTCTCTCGATACTCTCGTTTCCTATTCCCCACGCACCTTCGCTTTCCTCTTGTTTGGACGCGTCGAAGACGCTAAGGCCGCGAAAACCAACTTACAAGGCGCGTTGCTCCGCGGCTTTCAAATCAGAATCGAATTTGCAGTACCGGCAAGACCGTGTAAACAGCTATGGGTGGGGGGTGTTAGCCACGCTGTACCGGTGGAGGAATTGGAAGCGGAATTTCGTAAATTCGGTAAGGTTGAGGATTTCAAGTTCTTCAGAGACCGTCGTACTGCGTGTGTTGAGTTTCTCAATCTGGATGATGCTACTCGGGCCATGAAAGTCATGAACGGGAAGCGATTAGGTGGCGGCCATATTTTTGTAGACTTCCTTAGGTTACAATCGACGAATAGAGATTTTTTGGTTGACCAAGGGCAGTTTCAGGCTAGACCACAGCATTTGCAATCTTCAATGGGGAGGAATAGTCAACCCAGTAACATTTTGTGGATAGGTTTTCCTCCTTCATTTCAAATTGATGAACAAATGCTCCACAATGCCATGATTTTGTTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCTAGACATTATTCATTTGTTGAATTTAGAAGCATTGATGAAGCTCGCCGTGCCAAAGAGGGCCTTCAAGGACGGCTTTTTAATGATCCTCGAATAACGATTATGTATTCATGCAGTGATCTGACACCTGGCAAAGATTACCCTGGATTTTATCCTGGAAGTAAAGGGCTTTTACCTGATGGATTAGTTAATGAGCATCCATTTCGACCACAACAAACGGATGTGTTTGGTCAAAATCGTCCTATAGTTCCAAATAATTTTCCTGGGCAATTGCCACCTGGTGGTATTAGTGGACCTAACGTCCCAATGCGACCTTTTGTTCCTCAAGGTCTTGAACCTCTTAACTCAGGTCCTGATTTTAATGAGATGGGCGCACTTCACAAATTTCAAGATGGTAGCTCTAAAATGGGTCCAAGATGGAAAAGGCCATCTCCTCCTGCCCCTGGTATGCTTTCTTCTCCTATGCCTGGTATTAGGCCCACCTCTGGTCCATGGGATGTACTTGACACAAACCAATTTTCAAGAGATTCTAAACGCTCGAGGATAGATGATGCTATGCTTATTGGTGATGCTCCATTTCCTTTAAGAAATATTGATGACCGTGGATTAAGATTAGAACAACCATTTGCAATTGATCCAATTATTGATGGAGGTGGTTCTGGTCCAAAGAGTCACCTTGGTCCAGTCGGCACTAGGATCACATCTGGAGTTCCTGGTTCTGTCCAACCTGATATTGTTGAACATATATGGCGTGGAATTATTGCAAAAGGGGGAACTCCTGTTTGTCGTGCTAGATGTGTGCCTATTGGAAAAGGGATAGGCACTGAGATTCCTGATGTTGTAGATTGTGCTGCTAGGACTGGATTGGATATGTTAACGAAACACTATGCTGATGCCATTGGCTTTGAAATTGTTTTCTTTCTCCCTGATAGTGAAGAGGATTTTGCTTCATACACTGAATTCCTTCGTTACCTTAAAGCAAAAAACCGTGCCGGTGTTGCCAAGTTTACTGATAACACCACTCTATTTTTGGTACCTCTTTCTGATTTCTTGACCAAGGTTTTGAAAGTCACAGGACCTGAACGATTATATGGTGTGGTTCTTAAGTTTCCATTAGTTCCAAGTAGCACATCTGTTCAACAAGCAATGCATTTTCCTTCACCCTCTACTCAGTATGTGCAACAGATTCCCCCTTCACAACCTGAGTATGGTTCAATCTCTATAAAGGAGCAACCAATTTTACCAATGGAATATAACAGATTGTTGCATGATGATTCTAAGCGTCTGCCAAAACCACTTCATCTTGCTACGAGTGTCACTCCTCCACCTCATTCTGTTCCTCCTGATTATGCTTCTACTTATACAGCTTCTGCATCTCAAGCGGGAGTTACACTGACCCCTGAACTTATTGCGACTTTAACTTCCTTTCTGCCTTCAACTATACCATCATCAACAGCTGGTGGCACAATGACTGTGGTTGGTCCTTCTAATGTGAAGCCACCTTTTCCATCTGTTGCATCTAATGATGGAAATCAATCTCATTTGTGGAAACAAGATCAGCAAACTGCAGAACCACCTAGTTATCATACTCAACAGTTTGGGAGTATTCATAATTCTCAATATCCTTATCCACCTGCATCTTCTACTGGGCACCCTGCTCAAGTTGTCTCTGGCAGTTCTCATTTCCATGATACGGCTTCATGTCTTCAGCAGCTAGGTGCTGTTTCATCGTCTACATCCTTGACTAATTTAATTATACCTTCTCAAAATGGACAGGAAGCTGTTCCCCCTCAAGTCGGTCAGCAGTATCAGGTGGAAGTCCCCCATGGCTCTGAGAAAGGCTATGGAGTAGTTCAGGGAACAGATCCCTCTGTTCTATATAGTTCCAAGGCATTCCAACAACCTAATAATTATATTCCCTCATCCAACCAAGTTTCCAATGCTGCTTCACAGCAACACATGAATTCAGAGCCCCCAAATCAGCAACTTCAACCTGCTTTATGTGGAGCTGGCCAGGGAAACTCCGAATTGGAGGCTGATAAGAACCAGAGGTACCACTCAACACTACAGTTTGCTGCAAACCTTCTCTTCCAGATACAGCAACAGCAAACTCAAGGAGAGCATGGGCCTGGAAATCAGCAATAA 2847 0.4426 MPPPTKSLESEDWGTPTNNLWVGNLPPEVTDSDLMELFAPYGSLDTLVSYSPRTFAFLLFGRVEDAKAAKTNLQGALLRGFQIRIEFAVPARPCKQLWVGGVSHAVPVEELEAEFRKFGKVEDFKFFRDRRTACVEFLNLDDATRAMKVMNGKRLGGGHIFVDFLRLQSTNRDFLVDQGQFQARPQHLQSSMGRNSQPSNILWIGFPPSFQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSIDEARRAKEGLQGRLFNDPRITIMYSCSDLTPGKDYPGFYPGSKGLLPDGLVNEHPFRPQQTDVFGQNRPIVPNNFPGQLPPGGISGPNVPMRPFVPQGLEPLNSGPDFNEMGALHKFQDGSSKMGPRWKRPSPPAPGMLSSPMPGIRPTSGPWDVLDTNQFSRDSKRSRIDDAMLIGDAPFPLRNIDDRGLRLEQPFAIDPIIDGGGSGPKSHLGPVGTRITSGVPGSVQPDIVEHIWRGIIAKGGTPVCRARCVPIGKGIGTEIPDVVDCAARTGLDMLTKHYADAIGFEIVFFLPDSEEDFASYTEFLRYLKAKNRAGVAKFTDNTTLFLVPLSDFLTKVLKVTGPERLYGVVLKFPLVPSSTSVQQAMHFPSPSTQYVQQIPPSQPEYGSISIKEQPILPMEYNRLLHDDSKRLPKPLHLATSVTPPPHSVPPDYASTYTASASQAGVTLTPELIATLTSFLPSTIPSSTAGGTMTVVGPSNVKPPFPSVASNDGNQSHLWKQDQQTAEPPSYHTQQFGSIHNSQYPYPPASSTGHPAQVVSGSSHFHDTASCLQQLGAVSSSTSLTNLIIPSQNGQEAVPPQVGQQYQVEVPHGSEKGYGVVQGTDPSVLYSSKAFQQPNNYIPSSNQVSNAASQQHMNSEPPNQQLQPALCGAGQGNSELEADKNQRYHSTLQFAANLLFQIQQQQTQGEHGPGNQQ* 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1587 948 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 273 IPR000504 GO:0003723
Pvu5g1587 948 MobiDBLite consensus disorder prediction 666 686 - -
Pvu5g1587 948 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 90 IPR000504 GO:0003723
Pvu5g1587 948 MobiDBLite consensus disorder prediction 726 793 - -
Pvu5g1587 948 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 167 IPR000504 GO:0003723
Pvu5g1587 948 CDD RRM3_Spen 20 88 - -
Pvu5g1587 948 Gene3D - 178 276 IPR012677 -
Pvu5g1587 948 Gene3D - 94 172 IPR012677 -
Pvu5g1587 948 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 6 948 - -
Pvu5g1587 948 MobiDBLite consensus disorder prediction 735 793 - -
Pvu5g1587 948 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 157 IPR000504 GO:0003723
Pvu5g1587 948 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 84 IPR000504 GO:0003723
Pvu5g1587 948 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 266 IPR000504 GO:0003723
Pvu5g1587 948 Gene3D - 3 93 IPR012677 -
Pvu5g1587 948 SUPERFAMILY RNA-binding domain, RBD 16 169 IPR035979 GO:0003676
Pvu5g1587 948 SMART rrm1_1 96 163 IPR000504 GO:0003723
Pvu5g1587 948 SMART rrm1_1 201 269 IPR000504 GO:0003723
Pvu5g1587 948 SMART rrm1_1 19 86 IPR000504 GO:0003723
Pvu5g1587 948 PANTHER RNA RECOGNITION MOTIF-CONTAINING 6 948 - -
Pvu5g1587 948 SUPERFAMILY RNA-binding domain, RBD 185 274 IPR035979 GO:0003676
Pvu5g1587 948 MobiDBLite consensus disorder prediction 871 908 - -
Pvu5g1587 948 MobiDBLite consensus disorder prediction 871 903 - -
Pvu5g1587 948 Pfam SPOC domain 481 595 IPR012921 -
Pvu5g1587 948 MobiDBLite consensus disorder prediction 364 405 - -
Pvu5g1587 948 CDD RRM3_Spen 202 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1587 Pvu-Chr5 38052731 38067609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1587 19 268 Eukaryotic Initiation Factors Gene Family AT3G16380 24.727 4.58e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1587 - - gmx:100806555 1496.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1587 5 38052731 38067609 Pvu5g1587 5 38052731 38067609 ECH
Pvu5g1587 5 38052731 38067609 Pvu11g0547 11 4526035 4532862 PCT