Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1582 ATGAAAATTCAGTGTGATGTGTGTGAGAGAGCTCCAGCAACAGTGATTTGTTGCGCAGATGAGGCAGCTCTGTGTGCCAAATGTGATGTTGAAGTTCATGCTGCAAACAAGCTTGCAAGCAAGCACCAAAGGCTTCTTCTTCAATGTCTATCAAACAAGCTTCCCAGATGTGACATTTGCCAAGACAAGCCAGCATTCATATTTTGTGTTGAAGACAGAGCACTCTTCTGTCAGGACTGTGATGAACCAATTCATTCACCTGGAAGCCTTTCTGCAAACCACCAGCGCTTCCTAGCTACTGGTATCCGAGTGGCTTCAAGTTCGATATGCACCAAAGACAATGAAAATAGTCACTTGGAGCCTCCCAATAGGAATGCACAACAAGTTTCCACGAAAGTTCCTTCTCAGCAAGTGCCTAGCTTCACACCCTCTTGGCCTGTTGATGACTTTTTGGAATTAACAGGCTATGAATCACCTGAGAAAAAGGAATCTCTACAATTTGGAGAGCTGGAATGGCTTACAGATGCAGGTATTTTTGGTGAACAATTTATTCAGGAAGCCTTGGCTGCAGCTGAAGTACCTCAGCTTCCAGTGACTCATAATAGCAGCAGTGTTGCCTCATACAGAACCTCCAAGTCCTACATGTCACAGAAAAAGCCTAGGATTGAAGTCCAAAATAATGATGATGATGATGAGTACTTCACTGTGCCTGATCTTGGCTAA 723 0.4398 MKIQCDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKPAFIFCVEDRALFCQDCDEPIHSPGSLSANHQRFLATGIRVASSSICTKDNENSHLEPPNRNAQQVSTKVPSQQVPSFTPSWPVDDFLELTGYESPEKKESLQFGELEWLTDAGIFGEQFIQEALAAAEVPQLPVTHNSSSVASYRTSKSYMSQKKPRIEVQNNDDDDEYFTVPDLG* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1582 240 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 240 - -
Pvu5g1582 240 CDD Bbox1_BBX-like 5 47 - -
Pvu5g1582 240 MobiDBLite consensus disorder prediction 201 221 - -
Pvu5g1582 240 MobiDBLite consensus disorder prediction 113 143 - -
Pvu5g1582 240 CDD Bbox1_BBX-like 57 98 - -
Pvu5g1582 240 Gene3D Classic Zinc Finger 1 95 - -
Pvu5g1582 240 MobiDBLite consensus disorder prediction 201 240 - -
Pvu5g1582 240 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Pvu5g1582 240 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Pvu5g1582 240 SMART bboxneu5 52 99 IPR000315 GO:0008270
Pvu5g1582 240 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pvu5g1582 240 MobiDBLite consensus disorder prediction 113 144 - -
Pvu5g1582 240 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Pvu5g1582 240 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pvu5g1582 240 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1582 Pvu-Chr5 38024013 38026445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1582 1 161 Orphan Transcription Factor Family AT1G06040 62.353 4.26e-67 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pvu5g1582 zf-B_box 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1582 - - vun:114183169 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1582 5 38024013 38026445 Pvu5g1582 5 38024013 38026445 ECH
Pvu5g1582 5 38024013 38026445 Pvu11g0551 11 4560575 4563814 PCT